Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00829 ATGGCTCCTTCAGGTCCCAATCACCTTTCTCATCCATGTATTCATGGGGACTTTGTTTCTTCACACGCAGAGAGAAAGTCGTGGTTTAGAAAATGGCTAAGTAAGCTTTTTAAGGGTGGATCCAATCGAGGTGGTGGAGGACGTAATGTACATCTTCATGGGGAGGAAAACATGGTCTGGAGTGCACCAGCTAGATCATTGGATGATCCTGGTAGAGCACGGAAGGAAAAAGAGGAGGTGGATCGAGCACTTGCACTTTCCTCGGCAGAAGATTCAAAGAGATCAAATGCCAGAGGATATAAATGGAGGACAGACACTGATGAAGAACTTGCAAGGGCACTTCAAGACTGTCCATATTCACCTGCGTATCCGCCTTATGCTCCGACACAATATTATCCCAGGGGGTACAAAATATGTGGAGGATGTCACCATGAGATAGTCCACGGAAATTATTTGGGATGCCTAGACACATTCTATCATCCAGATTGCTTCCTTTGCCGTTCTTGTGGTTTTCCAATCACTGAGCGTGAGTTTTCTTTGTCAGGGAGAGATCCATATCACAAATTTTGTTTCAAAGAGATGACACACCCCAAATGTGAAGTTTGTCATCAATTTATTCCCACAAACGCAGCTGGTTTGATAGAGTATAGATGCCACCCATTTTGGTCACAAAAGTATTGCCCGTGCCACGAACATGATAACACAGCTCGCTGCTGTAGCTGTGAAAGGTTGGAGTCTTGGAATGCAAGATACTATACTTTGGAAGATGGACGAAGTCTATGCATGGTGTGCGTGGAATCTGCTATAATGGATACTGGAGATTGCCAGCCTCTTTACCATGCCATTAGAGATTATTATGAAGGACTGAACATGAGGCTAGACCAACAGATTCCGATGCTACTAGTTGAGAGACAAGCGCTGAATGAAGCTATTATTGGGGAGAAGATTGGTTTCCATCACTTGCCTGAGACTAGAGGGTTATGCCTTTCTGAAGAGCAAACTGTAACCAGCATTCTAAGGCCAAAATTTGGAGCTCACAGGTTTGTAGGAGTGAGAACTCAACGTCAAAAGCTCTCTCGGAAATGTGAAGTTACAGCAATTCTTGTTCTCTATGGCCTGCCAAGATTGCTCACAGGTGCAATCCTTGCACATGAGTTGATGCATGGCTGGTTACGCCTTAAAGGTTACTGCAACCTTAACCCTGAGGTGGAGGAAGGTATCTGCCAGGTGCTCTCTTACATGTGGCTTGAGTCAGAAGTAATGCCAGGATTTGAAAACACGGCATCTACATCAGCAGCTCCCTCTTCATCATTGTCATCGAAGAAAGGCGCAAAATCAGACACTGAGAATAATCTGGGGAAATTTTTTATGCATCAAATAGCACATGATGCTTCCCCAGCATATGGGGGCGGTTTTAGAGCTGCTAATGCAGCCGTGAATAAGTACGGTCTACGTCGCACTCTTGATCACATTCGTCTTACTGGAAATTTCCCGTTGTAA 1500 0.4473 MAPSGPNHLSHPCIHGDFVSSHAERKSWFRKWLSKLFKGGSNRGGGGRNVHLHGEENMVWSAPARSLDDPGRARKEKEEVDRALALSSAEDSKRSNARGYKWRTDTDEELARALQDCPYSPAYPPYAPTQYYPRGYKICGGCHHEIVHGNYLGCLDTFYHPDCFLCRSCGFPITEREFSLSGRDPYHKFCFKEMTHPKCEVCHQFIPTNAAGLIEYRCHPFWSQKYCPCHEHDNTARCCSCERLESWNARYYTLEDGRSLCMVCVESAIMDTGDCQPLYHAIRDYYEGLNMRLDQQIPMLLVERQALNEAIIGEKIGFHHLPETRGLCLSEEQTVTSILRPKFGAHRFVGVRTQRQKLSRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYCNLNPEVEEGICQVLSYMWLESEVMPGFENTASTSAAPSSSLSSKKGAKSDTENNLGKFFMHQIAHDASPAYGGGFRAANAAVNKYGLRRTLDHIRLTGNFPL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00829 499 ProSitePatterns LIM zinc-binding domain signature. 139 173 IPR001781 -
Pte16g00829 499 Gene3D Cysteine Rich Protein 129 197 - -
Pte16g00829 499 ProSiteProfiles LIM domain profile. 137 197 IPR001781 -
Pte16g00829 499 Pfam LIM domain 139 192 IPR001781 -
Pte16g00829 499 FunFam Protein DA1-related 2 127 192 - -
Pte16g00829 499 CDD LIM_DA1 139 191 - -
Pte16g00829 499 SMART lim_4 138 190 IPR001781 -
Pte16g00829 499 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 164 - -
Pte16g00829 499 PANTHER PROTEIN DA1-RELATED 2 32 498 IPR045218 -
Pte16g00829 499 Pfam Protein DA1 288 494 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00829 Pte-Chr16 27233816 27238908 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte16g00829 DA1-like 8.2e-93 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00829 - - qsa:O6P43_014377 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00829 16 27233816 27238908 Pte16g00829 16 27233816 27238908 RCT