Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00822 ATGAAGGCGTTGATTCTTGTTGGTGGATTTGGAACTCGGTTGAGGCCATTGACACTGAGTGTCCCTAAGCCCCTTGTTGATTTTGCTAACAAACCCATGATTTTGCACCAGATTGAGGCGCTTAAGGCTATTGGAGTGACTGAAGTTGTGTTAGCAATCAATTATCAGCCAGAGGTGATGTTAAATTTCTTGAAGGAGTTTGAAACTAAGCTTGGTATCAAAATTACATGTTCACAAGAAACTGAGCCTCTGGGCACTGCTGGTCCCTTGGCTCTTGCCAGAGACAAGCTGATTGATGGCTCTGGAGATCCATTTTTTGTTCTCAACAGTGATGTCATTAGTGAGTATCCCCTAAAACAGATGGTTGATTTTCACAAATCCCATGGAGGAGAGGCTTCCATAATGGTGACCAAGGTCGATGAGCCATCAAAATATGGTGTGGTCGTAATGGAAGAGTCAACTGGAGAAGTTGAGAAATTTGTGGAAAAACCAAAGCTGTTTGTTGGTAACAAAATCAATGCGGGCATTTACCTTTTGAACTCTTCAGTTTTGGATCGAATTGAACTGAGGCCTACATCTATCGAGAAAGAGGTCTTTCCAAAAATTGCAGCTGAGAAGAAGCTATTTGCAATGGTCTTACCAGGGTTTTGGATGGACATTGGACAACCAAGGGACTATATCACGGGGCTGAGACTTTACCTTGATTCATTGAGAAAGAAATCTCCATCCAATTTGGCTTCTGGTACTCAAATTGTGGGTAATGTCATCATTGATGAGAGCGCCAAAATTGGTGAGGGATGTCTCATTGGACCTGATGTTGCAATTGGCCCTGGTTGTGTTGTTGAGTCAGGGGTGAGACTTTCAAGATGCACTGTAATGCGTGGAGTCCGTATCAAGAAGCATGCTTGTGTATCTAGCAGTATCATTGGTTGGCACTCGACAGTAGGGCAGTGGGCTCGTGTGGAGAATATGACTATCCTTGGAGAAGATGTGCATGTAGGTGATGAAGTCTATAGTAATGGTGGTGTAGTCTTACCCCATAAGGAGATCAAGTCGAGCATTTTGAAGCCAGAGATAGTCATGTGA 1086 0.4346 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVTEVVLAINYQPEVMLNFLKEFETKLGIKITCSQETEPLGTAGPLALARDKLIDGSGDPFFVLNSDVISEYPLKQMVDFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGEVEKFVEKPKLFVGNKINAGIYLLNSSVLDRIELRPTSIEKEVFPKIAAEKKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSNLASGTQIVGNVIIDESAKIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKKHACVSSSIIGWHSTVGQWARVENMTILGEDVHVGDEVYSNGGVVLPHKEIKSSILKPEIVM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00822 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 232 IPR029044 -
Pte16g00822 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Pte16g00822 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 360 - -
Pte16g00822 361 Gene3D Hexapeptide repeat proteins 236 356 - -
Pte16g00822 361 Pfam Bacterial transferase hexapeptide (six repeats) 260 295 IPR001451 -
Pte16g00822 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058
Pte16g00822 361 FunFam mannose-1-phosphate guanyltransferase beta 1 232 - -
Pte16g00822 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00822 Pte-Chr16 27181226 27184688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00822 1 147 Eukaryotic Initiation Factors Gene Family AT4G18300 23.871 4.30e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00822 K00966 - mnt:21409003 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00822 16 27181226 27184688 Pte16g00822 16 27181226 27184688 RCT