Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00793 ATGGACAGCTACTTCCATTTCGACAACAGCGAAGCCAGTTTGTCTCCTGGCTTCCACCTTACTGATGAGGAGCTCATCACATGTTATCTCCTAAGGAAAGTCCTTGACAACAGCTTTATTGGGGTAGCCATTGCTGAAATTGACCTCAACAGGTGCGAACCATGGGAGCTTCCAGATAAAGCTAAGATCGGTGAGAAAGAATGGTATTTCTTTAGCTTGCATGACAGGAAGTACCCAACTGGTTTACGAACTAACAAAGCTACTGAGGCTGGTTACTGGAAAGCTACCGGCAAAGACAGAGATATTTACAGCTCCAAAAGCAGCTCTCTCGTTGGAATGAAGAACTCTGGTGTTCTACCGAGGTTAGCAGGGAAATTAGGGGAGTCAGCAGGTGAGGTGGAAGGCTGA 408 0.4657 MDSYFHFDNSEASLSPGFHLTDEELITCYLLRKVLDNSFIGVAIAEIDLNRCEPWELPDKAKIGEKEWYFFSLHDRKYPTGLRTNKATEAGYWKATGKDRDIYSSKSSSLVGMKNSGVLPRLAGKLGESAGEVEG* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00793 135 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 118 - -
Pte16g00793 135 Gene3D NAC domain 21 129 IPR036093 GO:0003677|GO:0006355
Pte16g00793 135 SUPERFAMILY NAC domain 14 115 IPR036093 GO:0003677|GO:0006355
Pte16g00793 135 ProSiteProfiles NAC domain profile. 12 135 IPR003441 GO:0003677|GO:0006355
Pte16g00793 135 Pfam No apical meristem (NAM) protein 18 119 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00793 Pte-Chr16 26509418 26509938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00793 4 133 NAC Transcription Factor Family AT5G53950 65.672 7.40e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte16g00793 NAM 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00793 - - vvi:100246914 200.29