Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00787 ATGGCCTCTTCTCTGGATATGACTCTCGATGAAAGAATTAAGAGTAATAGAACTAACAGAGAGAGAGGTAGAGGGCGTGGTAGAACTCGACGTGGTCGTGGACCTGGTATACCAGTGAGTGGTGGAAGGTTGTCTGCTGCAGCTCGTAGAGCACCTGTTATGGTGAAAGCACGGCCATCCTCGCATGCTATTGCCAAGTCTATTCGCAGAACAAGGACAATACCGTGGCAGCATGACTTGTTTGAAGATAGCATTAGAGCTGCAGGGATACAGGGAATTGAAGTTGGAACCAAGTTATATGTCTCCAACCTAGAGCAAGGAGTTACCAGTGATGATATAAGGGAACTTTTCTCGGAGATTGGAGACATGAAGCGTTATGCAATTCATTATGACAGAAACGGGCGACCAAGTGGTTCTGCTGAAGTTATCTATACGAGAAGAAGTGATGCTTTTGCAGCTCTGAAACGTTACAACAATGTGCTTTTGGATGGGAAGCCCATGAAGATTGAAGTTGTAGGTGCTAAGGCAGAACTGCCTGTTACCGCTCGTGTGAATGTAACAGGTTTCAGTGGGCAGCGGAAAAGGACAGTTTTCATGACGCCAGTAGGAGGTCGCATTGGTGGCTCTGCAATAACAAATGGCGGTTCTGCTGTTAGGGGTCGTCGTGGAGGTGCAAGGGGAGGCAGTGGTCGTGGTGGTCGAGGACGGGGTCGTGCCACTGCAAGAGGTGCAGGACGTGGTCTTGCCACTGCAAGAGGTGCAGGTCGTGGTCGTGGTAGAGGAAAGGGAATGAAGTCAGCAGAAGAGCTTGACAAAGAATTGGATACTTACCATGCAGAAGCGATGAATATCTCGTGA 858 0.4883 MASSLDMTLDERIKSNRTNRERGRGRGRTRRGRGPGIPVSGGRLSAAARRAPVMVKARPSSHAIAKSIRRTRTIPWQHDLFEDSIRAAGIQGIEVGTKLYVSNLEQGVTSDDIRELFSEIGDMKRYAIHYDRNGRPSGSAEVIYTRRSDAFAALKRYNNVLLDGKPMKIEVVGAKAELPVTARVNVTGFSGQRKRTVFMTPVGGRIGGSAITNGGSAVRGRRGGARGGSGRGGRGRGRATARGAGRGLATARGAGRGRGRGKGMKSAEELDKELDTYHAEAMNIS* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00787 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
Pte16g00787 285 SMART rrm1_1 98 170 IPR000504 GO:0003723
Pte16g00787 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 174 IPR000504 GO:0003723
Pte16g00787 285 SUPERFAMILY RNA-binding domain, RBD 20 171 IPR035979 GO:0003676
Pte16g00787 285 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 282 - -
Pte16g00787 285 MobiDBLite consensus disorder prediction 209 268 - -
Pte16g00787 285 Gene3D - 93 174 IPR012677 -
Pte16g00787 285 CDD RRM_THOC4 97 170 - -
Pte16g00787 285 SMART FoP_duplication_2 209 285 IPR025715 -
Pte16g00787 285 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00787 Pte-Chr16 26069794 26073797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00787 96 177 Eukaryotic Initiation Factors Gene Family AT2G23350 34.146 6.91e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00787 K12881 - qsa:O6P43_020583 315.849