Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00784 ATGGGAAGGCAACCATGCTGTGACAAAGTTGGATTGAAGAAAGGTCCATGGACAGCAGAAGAGGACAAGAAGCTAATCAACTTCATCCTCAACAATGGCCAATGCTGCTGGAGAGCTGTTCCTAAGCTTGCAGGACTTTTAAGGTGTGGGAAGAGTTGCAGGCTTAGATGGACAAACTATCTAAGGCCAGACTTGAAGAGAGGCCTCCTTTCAGAATATGAAGAAAAAATGGTGATTGATCTCCATGCTCAACTTGGCAACAGATGGTCCAAAATTGCTTCTCATCTCCCTGGAAGAACTGACAATGAAATCAAGAACCATTGGAATACACACATAAAGAAGAAATTGAGAAAGATGGGAATTGACCCTCTAACACACAAGCCTGTCTCTACTCCACCAGAGCTAACTAGCCAGAAACCTCAACCGGAAAATGAGCTGCAGCCATCTTCATCTCTTAGTAACCCCACCATTGGAATTAATCAGATTAATGAGACTGAAAAATTACACATGTCATCAACCATAACTGAAGCTAGAGAAGAAGATGAAGAAGAAAGAGGAGAAAAAAGCAAGGACAACTCCTTTGACACAATGGAACTGGTCAATGGATTCTGCTTAGATGAAATTCCAATTCTAGAATCCCATGAAATTTTAGTCCCTTCGTCATCAACAAGTTCATCGACATCATCATCTTCTTCTTCTTCAAACTCATGTAACTTCCTGGATGATCTGCAGCTCTCAGATTTTGAGTGGTCATATAATTGCAGCAACATTGACAACAACAGGAGTGCAAACAACAGCAACATGAGTTTGTGGGATGATGACTTTAGTAGTTGGGATTTGCTAATTAATGAATATGATGGTGACAGGCAGCAAATGCTGGATCCTCCTACCTACCAGTGCCCAAGAATGGTGATGGATCAAGAATCTTGGGCATATGGACTGTTTGGATAG 951 0.4164 MGRQPCCDKVGLKKGPWTAEEDKKLINFILNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPLTHKPVSTPPELTSQKPQPENELQPSSSLSNPTIGINQINETEKLHMSSTITEAREEDEEERGEKSKDNSFDTMELVNGFCLDEIPILESHEILVPSSSTSSSTSSSSSSSNSCNFLDDLQLSDFEWSYNCSNIDNNRSANNSNMSLWDDDFSSWDLLINEYDGDRQQMLDPPTYQCPRMVMDQESWAYGLFG* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00784 316 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte16g00784 316 MobiDBLite consensus disorder prediction 171 193 - -
Pte16g00784 316 FunFam MYB transcription factor 11 67 - -
Pte16g00784 316 CDD SANT 16 61 IPR001005 -
Pte16g00784 316 PANTHER F14D16.11-RELATED 1 259 - -
Pte16g00784 316 Gene3D - 11 67 - -
Pte16g00784 316 MobiDBLite consensus disorder prediction 119 193 - -
Pte16g00784 316 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte16g00784 316 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Pte16g00784 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte16g00784 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte16g00784 316 SMART sant 66 114 IPR001005 -
Pte16g00784 316 SMART sant 13 63 IPR001005 -
Pte16g00784 316 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte16g00784 316 CDD SANT 74 112 IPR001005 -
Pte16g00784 316 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte16g00784 316 Gene3D - 70 143 - -
Pte16g00784 316 FunFam MYB-related transcription factor 70 130 - -
Pte16g00784 316 MobiDBLite consensus disorder prediction 130 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00784 Pte-Chr16 26037914 26039725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00784 1 315 MYB Transcription Factor Family AT5G16600 49.143 1.56e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte16g00784 Myb_DNA-binding 6.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00784 K09422 - qsu:111999648 409.838