Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00762 ATGAGACCAATATTCGACCTTGAAGTGGAGGCTTCAGTAGAAAATGAATCTGAAGGTAGCAGCCAAGTTTCGTGGTCCAACGTATCAGCTAACGAAATCTCTGCAGTTCCCTCATGTCAAAGCCTCACTAATTCTTCCACCATCACAAATCCAATAGTTTCTGAACCAAATCTAAAGCCAGTTTCTCTTGATTTAACTCTCAACTATGATGGTAACGAATTAGGTGATTCAATAGGCCTCTCATTTTCAAGTGAGAGCAGCAATGAACCTGCAGCCCCTGCTACTGCGTCGACCATCCCTCGAGTTTTCTCATGCAATTACTGTCAGCGCAAGTTTTACAGCTCGCAGGCACTAGGTGGTCACCAGAATGCTCACAAAAGAGAACGATCATTGGCGAAGCGAGCTATGCGAATGGGGTTCTTTTCTGATAGGTATACCAGCCTAGCATCCCTACCTCTTCATGGATCTTTCAGGTCATTAGGCATAAAAGCACACTCTTCACTTCATCATGGCTTTTCAACCACAATAAGGCCTCCTGAGATTATTGGAAATACTAGACTTGAGCAAGGTTATCTTGGCGTACCGACACCAATGTGCTCAGATGATGATGAAGAATATCAGTTGATGTGGCCAGGCAGTTTCCGTCAGGTTTCAGAGGTAGGTGAGACTCATCCTCGTACAAATTTTGAACTGACTGGAAGAACAGCTTTAAGTTTTACAGATGTGACAACTACAATAGACACAGGCAACTCTACGCCGGATCTTACATTGAAACTTTAA 780 0.4359 MRPIFDLEVEASVENESEGSSQVSWSNVSANEISAVPSCQSLTNSSTITNPIVSEPNLKPVSLDLTLNYDGNELGDSIGLSFSSESSNEPAAPATASTIPRVFSCNYCQRKFYSSQALGGHQNAHKRERSLAKRAMRMGFFSDRYTSLASLPLHGSFRSLGIKAHSSLHHGFSTTIRPPEIIGNTRLEQGYLGVPTPMCSDDDEEYQLMWPGSFRQVSEVGETHPRTNFELTGRTALSFTDVTTTIDTGNSTPDLTLKL* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00762 259 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Pte16g00762 259 Gene3D Classic Zinc Finger 92 147 - -
Pte16g00762 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Pte16g00762 259 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 60 175 IPR044246 GO:0009788
Pte16g00762 259 FunFam Zinc finger protein 2 81 149 - -
Pte16g00762 259 SUPERFAMILY beta-beta-alpha zinc fingers 101 130 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00762 Pte-Chr16 25293086 25295585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00762 85 260 C2H2 Transcription Factor Family AT1G66140 49.246 5.17e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte16g00762 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00762 - - gmx:100794851 315.079