Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00760 ATGGTTTTGTCTTGGACTAGAAGAAAAGGCTTTCGCTTTACCCGCAAGGAGAAAGAGAATTCAAATGCAGATTTCGACATGGAGGTGGTGACTCCAAGCCACTTCAGGTGTCCAATTTCACTGGATTTGATGAAAGATCCGGTCACTTTGGTTACTGGAATCACATATGATAGGGAGAGCATTGAGAAGTGGATTGAAGCTGGAAATAAAACATGTCCTGTGACAAACCAGGTTTTGAGGAGCTTTGATCAGATCCCGAATCATAGCATCATGCGGATGATCCAAGACTGGTGCGTTGACAACCAATCTTTTGGGATAGAAAGGATACCGACACCGCGGATTCCGGTGAGTCCTAGTGAAGTTTTGGACATTTGTAAGAAGTTAAACGCTGCAACTCAGCGTGGAGATGGCAAGAAGTGTCAAGAAATGGTGGGGAAGATCAAAGTTTGGGGAAAAGAGAGTGAGAGGAATAAGAAGTGTTTACTTGACAACGCGGTTGATGTTGTCTTATGCAATGCTTTCGAGTCTTTCTCAAGTTCAGTAGAGAAACATTGTGGTTTGTTGCAGGAGATCTTGTCTGTCCTGACATGGATTTTTCCAAATGTTGGAGAAGAGGGTCAAGCAAAATTAGGTTCTGCGCTGTCTTTACATAGCATGGTGTGGTTCTTAAATGTTAAAGACCTCACTGTACGGCAAAATGCAGCTGTAGTACTGAAAAATCTTGCTTGTCTAGATGAGTTGCAGGTTGAAGCATTGATGAAGACTGAAGGACTTACTGAGGCTTTGGTCAAGTTAGTTGGGGAACCAGTTGGACCAACAGCTACCAAGGCTTCTTTGACAATAATGTTACACATGATCTTTTGCAATGGAAGCAACAAGAGAATCGTGACAAGATTTGTGGAATTGGGTCTAGTCCCACTTTTACTTGAAATTCTTGTTGATGCAGAGAAAAGCATGTGTGAGAAGGCTTTGGGAGTATTGGATGGAATTTGTGATTGTCAAGAAGGGAGAGAGATGGCAAAGACAAATGCATTGACCATTCCTCTCATAGTTAAGAAGATTCTTCGTGTGTCAGTTTTGGGTTCTGAGTTTTCAGTTTCTATTCTTTGGAAGCTTTGCCAAAAGGAAAATGGAGATGTAGAAGGTGTTCTCATGGAGGCACTTCAATTGGGTGCATTTCAAAAGCTTTTGGTTGTGTTGCAGGTTGGTTGTGATGAGAGGGCAAAAGGTAAGACTACTGAGTTGTTGAAGTTGCTGAACACACACAAGAGAAAAGTTGATTGTGTGGATTCATCTTTAGAACTCAAGTATCTCAAGAAGCCATTTTGA 1329 0.4184 MVLSWTRRKGFRFTRKEKENSNADFDMEVVTPSHFRCPISLDLMKDPVTLVTGITYDRESIEKWIEAGNKTCPVTNQVLRSFDQIPNHSIMRMIQDWCVDNQSFGIERIPTPRIPVSPSEVLDICKKLNAATQRGDGKKCQEMVGKIKVWGKESERNKKCLLDNAVDVVLCNAFESFSSSVEKHCGLLQEILSVLTWIFPNVGEEGQAKLGSALSLHSMVWFLNVKDLTVRQNAAVVLKNLACLDELQVEALMKTEGLTEALVKLVGEPVGPTATKASLTIMLHMIFCNGSNKRIVTRFVELGLVPLLLEILVDAEKSMCEKALGVLDGICDCQEGREMAKTNALTIPLIVKKILRVSVLGSEFSVSILWKLCQKENGDVEGVLMEALQLGAFQKLLVVLQVGCDERAKGKTTELLKLLNTHKRKVDCVDSSLELKYLKKPF* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00760 442 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Pte16g00760 442 Pfam U-box domain 32 102 IPR003613 GO:0004842|GO:0016567
Pte16g00760 442 Gene3D - 123 418 IPR011989 -
Pte16g00760 442 SUPERFAMILY ARM repeat 218 422 IPR016024 -
Pte16g00760 442 SUPERFAMILY RING/U-box 28 106 - -
Pte16g00760 442 PANTHER WDSAM1 PROTEIN 28 429 IPR045185 GO:0061630
Pte16g00760 442 CDD RING-Ubox_PUB 32 83 IPR045210 -
Pte16g00760 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 106 IPR013083 -
Pte16g00760 442 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Pte16g00760 442 FunFam RING-type E3 ubiquitin transferase 31 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00760 Pte-Chr16 25262036 25265646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00760 28 443 U-box Gene Family AT5G37490 51.799 6.97e-138 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00760 - - qsa:O6P43_020558 590.882