Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00752 ATGCCACTCTTCACTCCACTCTTCACTCTCTCTCTCTTCTTCTCCACGGCCATTTGCCACTTCTCCTCCACATTCCCATCTTCCTCTTCCACTGCCCCTTCATTTTCCGAATGGCGACCCGCCCGCGCAACATACTACGCCGCCGCCGATCCCAGAGACACGGTGGGAGGCGCGTGCGGTTATGGCGACCTAGGTAAAGCTGGTTACGGCATGGCTACTGTTGGCCTCAGTGAAGCTTTGTTCGAAAGAGGCCAGATCTGCGGCGCCTGTTTTGAACTAAGATGTGTGGATGATTTACGATGGTGCATTCCTGGAACCTCCATGATTGTCACGGCTACTAACTTCTGTGCTCCTAACTATGCCTTCACCGCTGATGGCGGTGGACACTGTAACCATCCGAACAAGCATTTTGTGCTTCCGATTGAAGCTTTTGAGAAGATCGCTATTTGGAAAGCTGGTAATATGCCGGTACAGTATAGAAGGATTAAATGCAGAAAGGAAGGAGGGATTAGATTTACAATTACTGGATCAAGTATCTTTATCTCCGTGTTGATAAGCAACGTAGCAGGCAGTGGAGATGTTGCTGCAGCGAAAATCAAAGGTTCTAGAACCGGTTGGCTTTCAATGGGTCGCAACTGGGGACAAAATTGGCACGTAAATACTGACTTGAAAAATCAACCTCTTTCATTTGAGGTCACTGGCAGTGATGGGATTACAGTTACGTCTTACAATGTTGCTCCGAAGAATTGGATTTTTGGACAAACATTTGAAGGCAAGCAATTTGAGTCATAG 792 0.476 MPLFTPLFTLSLFFSTAICHFSSTFPSSSSTAPSFSEWRPARATYYAAADPRDTVGGACGYGDLGKAGYGMATVGLSEALFERGQICGACFELRCVDDLRWCIPGTSMIVTATNFCAPNYAFTADGGGHCNHPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRFTITGSSIFISVLISNVAGSGDVAAAKIKGSRTGWLSMGRNWGQNWHVNTDLKNQPLSFEVTGSDGITVTSYNVAPKNWIFGQTFEGKQFES* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00752 263 SUPERFAMILY Barwin-like endoglucanases 37 187 IPR036908 -
Pte16g00752 263 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Pte16g00752 263 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Pte16g00752 263 PRINTS Expansin signature 95 106 IPR002963 GO:0009664
Pte16g00752 263 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Pte16g00752 263 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Pte16g00752 263 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Pte16g00752 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664
Pte16g00752 263 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Pte16g00752 263 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Pte16g00752 263 PANTHER EXPANSIN-A15 19 261 IPR002963 GO:0009664
Pte16g00752 263 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Pte16g00752 263 Pfam Lytic transglycolase 74 159 IPR009009 -
Pte16g00752 263 Gene3D - 22 165 IPR036908 -
Pte16g00752 263 CDD DPBB_EXPA_N 37 164 - -
Pte16g00752 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Pte16g00752 263 SMART dpbb_1 73 159 IPR007112 -
Pte16g00752 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Pte16g00752 263 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Pte16g00752 263 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Pte16g00752 263 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Pte16g00752 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Pte16g00752 263 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Pte16g00752 263 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Pte16g00752 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Pte16g00752 263 Gene3D - 169 261 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00752 Pte-Chr16 25088324 25092148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00752 17 263 Expansin Gene Family AT3G03220 81.526 1.45e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00752 - - csav:115705382 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00752 16 25088324 25092148 Pte16g00752 16 25088324 25092148 RCT