Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00732 ATGGGCCGGAAAAGAGAGATGAAATTAGTAGAGGACATGACCGCTAGGAAGGTTACCTTCTCCAAGCGTAAGAGAGGTCTTTTCAAGAAAGCAAATGAGCTTGTCACATTGTGTGGAAGTGAAATTGCTATCGTCTTGTTCTCTCCTGCTGGCAAGCCCTTTGCATTTGCCTCTCCAATTGTTAAGCTTGTGACTGAATGGTTCTTGAATGATGAGGAGCCCAACTCAGAGGTTGAAAATGGTGAACTAGAAAATCTCAACCAACAACTCGTTCATTTGGAAGATCAAGTGAAGGTTGAGGTAGAAAAAGGGAAGGATCTTGAAAAAGCTAAGAATGAGAATATTGTCTTGAATATTAGGTCAAATTTTGATGATCTAAAGCTGCATTTGAGTGAGGTGGAGGCATCTGTTGCTTTGCTATTGCTTGCAGAGGCACCCCTTCTCAATTAG 450 0.4178 MGRKREMKLVEDMTARKVTFSKRKRGLFKKANELVTLCGSEIAIVLFSPAGKPFAFASPIVKLVTEWFLNDEEPNSEVENGELENLNQQLVHLEDQVKVEVEKGKDLEKAKNENIVLNIRSNFDDLKLHLSEVEASVALLLLAEAPLLN* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00732 149 CDD MADS 3 59 - -
Pte16g00732 149 FunFam Agamous-like MADS-box protein AGL62 12 78 - -
Pte16g00732 149 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Pte16g00732 149 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Pte16g00732 149 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Pte16g00732 149 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Pte16g00732 149 ProSiteProfiles MADS-box domain profile. 1 60 IPR002100 GO:0003677|GO:0046983
Pte16g00732 149 Coils Coil 76 103 - -
Pte16g00732 149 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Pte16g00732 149 PANTHER MADS BOX PROTEIN 3 133 - -
Pte16g00732 149 Gene3D - 12 92 IPR036879 GO:0003677|GO:0046983
Pte16g00732 149 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00732 Pte-Chr16 24214838 24215287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00732 1 119 Type I MADS-box Gene Family AT2G34440 41.985 3.10e-27 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte16g00732 SRF-TF 9.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00732 - - qsu:112030641 122.479