Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00675 ATGGCAGTGAAACCCTCGAGAGCTGATAAGAAAATTGCTTACGACAAGAAGCTTTGCCGTCTTCTAGATGAGTACAGCCAGATCCTTATTGTTGGTGCTGACAACGTTGGTTCAAAGCAGCTCCAAGATATTCGCAAGGGTTTAAGAGGTGACTCTGTCATTTTGATGGGTAAGAACACCATGATGAAGCGATCGATAAAGATTCATGCCGAGAACACTGGCAATAAGGCTTTACTCTCTCTTATTCCTCTCTTGGCGGGGAACGTTGGCTTCATTTTCACGAAGGGTGACTTGAAAGAAGTGAGCGAAGAGGTAGCAAAGTACAAGGTTGGAGCCCCAGCTCGTGTTGGCCTTGTTGCACCAATTGATGTGATTGTTCCCCCTGGAAACACTGGACTGGATCCTTCGCAGACCTCCTTCTTCCAGGTCCTCAACATTCCAACCAAGATTAATAAAGGTACTGTGGAGATTATTGCTTCTGTGGAAATCATTAAGAAGGGTGAGAAGGTGGGCTCATCTGAGGCTGCTCTGCTGTCAAAGCTTGGGGTAAGGCCCTTCTCCTATGGACTACTAGTCCAATCGGTTTATGAGAATGGATCAGTCTTCAGCCCTGAGGTTCTTGACCTCACTGAGGATGATCTTGCTGCAAAGTTTGCTGAAGGAGTCTCCATGGTCGCATCCTTATCACTGTCACTTTCCTATCCAACGCTTGCTGGTGCACCTCACATGCTCATCAATGGGTACAAGAATGTCTTGTCTGTTACAGTGGCTACTGAATACTCCTTCACGCAAGCAGAAAAAGTCATAGAGTACCTGAAGGATCCAAGCAAGTTTGCTGCCGCGGCAGCTCCTGCAGCACCAGCTGCTTCTGTTTCTGGAACTGCGAAGGTGGAAGACAAGAAGGAAGAGCCAGAAGAAGAATCTGATGATGAGCCAATGATGAACCTATTTGATGACTGA 960 0.4698 MAVKPSRADKKIAYDKKLCRLLDEYSQILIVGADNVGSKQLQDIRKGLRGDSVILMGKNTMMKRSIKIHAENTGNKALLSLIPLLAGNVGFIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIASVEIIKKGEKVGSSEAALLSKLGVRPFSYGLLVQSVYENGSVFSPEVLDLTEDDLAAKFAEGVSMVASLSLSLSYPTLAGAPHMLINGYKNVLSVTVATEYSFTQAEKVIEYLKDPSKFAAAAAPAAPAASVSGTAKVEDKKEEPEEESDDEPMMNLFDD* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00675 319 FunFam 60S acidic ribosomal protein P0 113 186 - -
Pte16g00675 319 PIRSF L10E 1 318 IPR030670 GO:0042254
Pte16g00675 319 Gene3D - 6 209 IPR043141 -
Pte16g00675 319 Pfam Ribosomal protein L10 9 108 IPR001790 -
Pte16g00675 319 MobiDBLite consensus disorder prediction 303 319 - -
Pte16g00675 319 SUPERFAMILY Ribosomal protein L10-like 9 134 IPR043141 -
Pte16g00675 319 MobiDBLite consensus disorder prediction 283 319 - -
Pte16g00675 319 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Pte16g00675 319 Gene3D - 114 185 IPR043164 -
Pte16g00675 319 CDD Ribosomal_P0_L10e 10 185 - -
Pte16g00675 319 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 303 - -
Pte16g00675 319 Pfam 60s Acidic ribosomal protein 234 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00675 Pte-Chr16 20823352 20825122 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00675 1 293 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 78.157 9.27e-171 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00675 K02941 - qsa:O6P43_014014 482.641