Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00668 ATGGCTTCCTCCTCCTTCCGAGACCGGACCTCCGAGTTTCGATCCTTGACGGAGACACTGAAGAAGATTGCAGAAGTCGCGCCACCTAAAAATCAAGCACAATCCAGAAACGTCCTATCCACATCGACATCTTCGTCAAATGAATCCACTCCGCTACTTCAATCTAGATCCGAATTTACCAGGAAGGCCTCACTGATCGGACTTGGTATCCATGAAGCTTGTAAGAAAATCGCTAGGCTGGCCCAATTGGCCAAGAAGTCATCCATGTTTAACGATCCTACCATGGAATTTCAAGAACTAACTGGTTTGGTTAAGAATGACATTACGTCACTGAATATAGCTCTTTCTGATCTACAAACAATTCAGAATATAAGTATAGCGGATGGAATATATTCCCAGGACACAATTGTTCATTCTACGGCTATTTTTGATGACTTGAAGAGCAAACTTATGGGGGCTACAAAACATTTACAAGATGTATTGACTACCAGAACAGAGAATATTAAGGCTTATGAGAACAGGAAGCAGATATTCTCTAAAAATATATCCCCAGAAAAGCCTTTCCAGTATCAACCAAAGGCTGTGGTTGAACCTCCCCCTTGGTCAAGTCCATCAACTGTTCCCCAGAGCCATGAGCAAGTGACAATGTTGCCACCGGGTGGAATTCCAGCCAGTAATCAACTAAGGCGAAGGCTAGCTGTTGACAGCAACCCATCCCAGCGCATGGAGATGTCCATGCTGCAACAGGTTGCACCCAGGCAGGAAACTTACACTGAGAACCGGGCTGCTGCTCTGCACAGTGTGGAGTCAACTATCACTGAGCTGAGTGGGATATTTACAAATTTAGCAACAATGGTTGCACAGCAAGGGGAACTTGCGATCAGGATTGACGACAACATGGGTGAGTCATTGGCAAACGTTGAAGGTGCTCATAATTCCCTATTGAGGCATCTGAGGCAAATATCATCAAATAGATGGCTCGTTATCAAGATATTTTTAATTCTGATAATTTTCCTGGCAGTGTTTATCTTCTTCGTTGCTTAA 1044 0.4397 MASSSFRDRTSEFRSLTETLKKIAEVAPPKNQAQSRNVLSTSTSSSNESTPLLQSRSEFTRKASLIGLGIHEACKKIARLAQLAKKSSMFNDPTMEFQELTGLVKNDITSLNIALSDLQTIQNISIADGIYSQDTIVHSTAIFDDLKSKLMGATKHLQDVLTTRTENIKAYENRKQIFSKNISPEKPFQYQPKAVVEPPPWSSPSTVPQSHEQVTMLPPGGIPASNQLRRRLAVDSNPSQRMEMSMLQQVAPRQETYTENRAAALHSVESTITELSGIFTNLATMVAQQGELAIRIDDNMGESLANVEGAHNSLLRHLRQISSNRWLVIKIFLILIIFLAVFIFFVA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00668 347 CDD SNARE_syntaxin5 259 327 - -
Pte16g00668 347 ProSitePatterns Syntaxin / epimorphin family signature. 261 300 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pte16g00668 347 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 255 317 IPR000727 -
Pte16g00668 347 MobiDBLite consensus disorder prediction 30 54 - -
Pte16g00668 347 SMART tSNARE_6 250 317 IPR000727 -
Pte16g00668 347 PANTHER SYNTAXIN 56 338 IPR045242 -
Pte16g00668 347 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 1 22 IPR021538 -
Pte16g00668 347 MobiDBLite consensus disorder prediction 24 54 - -
Pte16g00668 347 SUPERFAMILY t-snare proteins 56 310 IPR010989 GO:0016020|GO:0016192
Pte16g00668 347 Gene3D - 53 310 - -
Pte16g00668 347 Pfam SNARE domain 292 343 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00668 Pte-Chr16 19609105 19613685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00668 3 348 SNARE and Associated Proteins AT5G05760 60.345 1.45e-132 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00668 K08490 - qsa:O6P43_013881 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00668 16 19609105 19613685 Pte16g00668 16 19609105 19613685 RCT