Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00653 ATGGCAGACAAAGAATGCCCTTGCTTCGAGCTAATTGGCTTTGATAGGAATGAAGACCACCTCAACTCAACAGAAGCATATTCACAACACTTTGCTGAGTTTTCTGAATTCGATGAACTGCTCAAAAAAATAGGCAATGACGATCCTCCGTCTTATATACAACAACAGTCTGTTCCTCTAGCATCAACTGAGCCGCTGGTGAAGTATGACAATCGGTTCAAAGGATTGTCGCAAGAAACAACAGCTAAGCCATTTGAATTAGAGCTGACATTCGTAGGAGGAGGAGATAAGCAACTGTCGACTCAGGAAATAATGAGGTTAGCTGCAGCAAGGTTTGTCCAATCTAATGATTCTCTCAACGGTAACCCACCTTTTGGATTTTCCTTCTTTGAATCTGATCTGCCTAATGAAGTGCTCAAAGATGTGGAACTCGCAGAAACTCTTCTTCTTTCATCTATGGAAGTTGAAAAGGAGCGGTATGATACTGCAGCCAAACTACTCAACCAGTGTGATTCGTTGTCTTCTAGTAGAGGAAGTCCAGTTCAAAGGGGTAGTCTTCTATTTTCACAAGCTTTATGGGAGAAAATACATAGAAAAACAGGTATGACTAAAACAAACGGTTTGAGTATAACTCAACCATTCATCAATCTTGATGAGGCAATGATGAAGGATTCTCTCAGTGCACTGGCAATTCACGAAAAGCTTCCTTTTTGTAAAATTGCACAATTTGTTGGGATTCAAGCCATTGTAGAAAGTATGGCCAATGCCAAGAAGATTCATGTGATTGATCTTGGAATAAGGACCGGTACGCATTGGCCAATATTGATGCAGGCTCTGGCATTCAGAAATGGACGCCCCCTTGAGCTTCTAAAAATAACTGCAGTGGGGACTTGCTCGATGGATTTGACTGATGAAACAGGAAAGTGGTTGATGAGTTTTGCTGCTGCCATGAATATTCCATTTGCATTTAGGGCAGTCATGGTGACAGACATGTTAAATCTTAGCGAAGTTTTCTTCGATATAGCTTTTGATGAAAAGGTTGCCGTCTACACAGCATTCTCATTAATGTGCTTGATTGGTTTGCCGGACAGGCTTGATGCATTTATGAATCTTATAAGAAACATGAATCCAAGGATCATGGTTGTTTCAGAGATCGAGGCTAATCTCAATTCCAAGTCGTTTGTGAACCGTTGCACTGAGTCACTTTTCTTCTGTAGTGCATTCTTTGATTGTATTGAAACTTTCATGGCAAGGAATGATCCTCAAAGAATGGATGCAGAATCGAAGTACTTTGGCCAGCCTGTAAGTAACATGTTGGCGACTGAAGAAGAGGAAAGACGTGTCAGACAAGTAAAAATTGATGTGTGGAGGAAATATTTTGCACGCTTTGGGATGATGGAGATGGAACTGAGCTCCTCATCTTTACATCAAGCTAATATTGATTCAGATGATTGCAAGAGTTATCTCACAATTGATAGGAATGGAAGTTGCTTAATTCTTTGTTGGAAGGGCACACCACTTTTCTCACTTTCTGTTTGGGATTTCTTGAGTTGA 1554 0.4067 MADKECPCFELIGFDRNEDHLNSTEAYSQHFAEFSEFDELLKKIGNDDPPSYIQQQSVPLASTEPLVKYDNRFKGLSQETTAKPFELELTFVGGGDKQLSTQEIMRLAAARFVQSNDSLNGNPPFGFSFFESDLPNEVLKDVELAETLLLSSMEVEKERYDTAAKLLNQCDSLSSSRGSPVQRGSLLFSQALWEKIHRKTGMTKTNGLSITQPFINLDEAMMKDSLSALAIHEKLPFCKIAQFVGIQAIVESMANAKKIHVIDLGIRTGTHWPILMQALAFRNGRPLELLKITAVGTCSMDLTDETGKWLMSFAAAMNIPFAFRAVMVTDMLNLSEVFFDIAFDEKVAVYTAFSLMCLIGLPDRLDAFMNLIRNMNPRIMVVSEIEANLNSKSFVNRCTESLFFCSAFFDCIETFMARNDPQRMDAESKYFGQPVSNMLATEEEERRVRQVKIDVWRKYFARFGMMEMELSSSSLHQANIDSDDCKSYLTIDRNGSCLILCWKGTPLFSLSVWDFLS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00653 517 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 116 508 IPR005202 -
Pte16g00653 517 ProSiteProfiles GRAS family profile. 135 514 IPR005202 -
Pte16g00653 517 Pfam GRAS domain family 148 513 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00653 Pte-Chr16 19143890 19145443 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00653 142 513 GRAS Transcription Factor Family AT1G66350 30.239 3.40e-48 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte16g00653 GRAS 5.5e-78 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00653 - - qsa:O6P43_021850 446.817