Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00652 ATGGCAGACAAAGAATGCCCTTGCTTCGAGCTAATTGGCTTTGATAGGAATGAAGACCACCTCAACTCAACAGAAGCATATTCACAACACTTTGCTGAGTTTTCTGAATTCGATGAACTGCTCAAAAAAATAGGCAATGACGATCCTCCGTCTTATATACAACAACAGTCTGTTCCTCTAGCATCAACTGAGCCGCTGGTGAAGTATGACAATGGGTTCAAAGGATTGTCGCAAGAAACAACAGCTAAGCCATTTGAATTAGAGCTGACATTCGTAGGAGGAGGAGATAAGCAACTGTCGACTCAGGAAATAATGAGGTTAGCTGCAGCAAGGTTTGTCCAATCTAATGATTCTCTCAACGGTAACCCACCTTTTGGATTTTCCTTCTTTGAATCTGATCTGCCTAATGAAGTGCTCAAAGATGTGGAACTCGCAGAAACTCTTCTTCTTTCATCTATGGAAGTTGAAAAGGAGCGGTATGATACTGCAGCCAAACTACTCAACCAGTGTGATTCGTTGTCTTCTAGTAGAGGAAGTCCAGTTCAAAGGGTAGTCTTCTATTTTTCACAAGCTTTATGGGAGAAAATACATAGAAAAACAGGTATGACTAAAACAAACGGTTTGAGTATAACTCAACCATTCATCAATCTTGATGAGGCAATGATGAAGGATTCTCTCAGTGCACTGGCAATTCACGAAAAGCTTCCTTTTTGTAAAATTGCACAATTTGTTGGGATTCAAGCCATTGTAGAAAGTATGGCCAATGCCAAGAAGATTCATGTGATTGATCTTGGAATAAGGACCGGTACGCATTGGCCAATATTGATGCAGGCTCTGGCATTCAGAAATGGACGCCCCCTTGAGCTTCTAAAAATAACTGCAGTGGGGACTTGCTCGATGGATTTGACTGATGAAACAGGAAAGTGGTTGATGAGTTTTGCTGCTGCCATGAATATTCCATTTGCATTTAGGGCAGTCATGGTGACAGACATGTTAAATCTTAGCGAAGTTTTCTTCGATATAGCTTTTGATGAAAAGGTTGCCGTCTACACAGCATTCTCATTAATGTGCTTGATTGGTTTGCCGGACAGGCTTGATGCATTTATGAATCTTATAAGAAACATGAATCCAAGGATCATGGTTGTTTCAGAGATCGAGGCTAATCTCAATTCCAAGTCGTTTGTGAACCGTTTCACTGAGTCACTTTTCTTCTGTAGTGCATTCTTTGATTGTATTGAAACTTTCATGGCAAGGAATGATCCTCAAAGAATGGATGCAGAATCAAAGTACTTTGGCCAGCCTGTAAGTAACATGTTGGCGACTGAAGAAGAGGAAAGACGTGTCAGACAAGTAAAAATTGATGTGTGGAGGAAATATTTTGCACGCTTTGGGATGATGGAGATGGAACTGAGCTCCTCATCTTTACATCAAGCTAATATATTGATTCAGCAATATGATTGCAAGAGTTATCTCACAATTGATAGGAATGGAAGTTGCTTAATTCTTTGTTGGAAGGGCACACCACTTTTCTCACTTTCTGTTTGGGATTTCTTGAGTTGA 1560 0.4038 MADKECPCFELIGFDRNEDHLNSTEAYSQHFAEFSEFDELLKKIGNDDPPSYIQQQSVPLASTEPLVKYDNGFKGLSQETTAKPFELELTFVGGGDKQLSTQEIMRLAAARFVQSNDSLNGNPPFGFSFFESDLPNEVLKDVELAETLLLSSMEVEKERYDTAAKLLNQCDSLSSSRGSPVQRVVFYFSQALWEKIHRKTGMTKTNGLSITQPFINLDEAMMKDSLSALAIHEKLPFCKIAQFVGIQAIVESMANAKKIHVIDLGIRTGTHWPILMQALAFRNGRPLELLKITAVGTCSMDLTDETGKWLMSFAAAMNIPFAFRAVMVTDMLNLSEVFFDIAFDEKVAVYTAFSLMCLIGLPDRLDAFMNLIRNMNPRIMVVSEIEANLNSKSFVNRFTESLFFCSAFFDCIETFMARNDPQRMDAESKYFGQPVSNMLATEEEERRVRQVKIDVWRKYFARFGMMEMELSSSSLHQANILIQQYDCKSYLTIDRNGSCLILCWKGTPLFSLSVWDFLS* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00652 519 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 116 511 IPR005202 -
Pte16g00652 519 Pfam GRAS domain family 148 515 IPR005202 -
Pte16g00652 519 ProSiteProfiles GRAS family profile. 135 516 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00652 Pte-Chr16 19128365 19129924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00652 142 515 GRAS Transcription Factor Family AT1G66350 31.383 2.02e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte16g00652 GRAS 3.1e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00652 - - qsa:O6P43_021850 473.011