Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00627 ATGTATGGTGGTGACGAAGTATCTGCCATAGTAGTAGACTTGGGTTCGCACACTTGTAAAGCTGGTTATGCTGGTGAAGATGCCCCAAAAGCTGTGTTTCCTTCTGTTGTTGGAGCAATTGACCAAATGGAGGTTGATGAACCGGCAAATCCTGATCAGAACGTCGGCGGTGTTGGAGATTTGAAAAACAATGTGGAGAAAAACAAGGGAAAAAGAAAACTGTATGTAGGAACTCAAGCTTTGGGATACCGTAGGGATCATATGGAGGTGTTATCCCCATTAAAGGATGGAGTTGTTCTCGATTGGGATATCGTGGACAATATATGGGATCATGCTTTCAGGGAATGCCTGTTGATTGATCCCCAAGAGCACCCAATGCTACTTGCAGAACCGTGTTCAAACACTCAACAACAGAGGGAGAGAACGGCAGAGATTATGTTTGAAAAGTACAAGGTCCCTGCATTGTTTTTGGCCAAGAATGCTGTTCTCACATCTTTTGCTTCTGGACGTGCTACCTCACTAGTTGTTGATAGTGGTGGAGGATCAACAACAGTTGCCCCAGTGCATGATGGCTACGTTCTTCAGAAGGCTGTGGCCACTTCACCAATTGGAGGAGAGTTTCTGACAGATTGCTTGATGAAAAGCTTGGAAAGTAAAGGTATTGTGATAAAACCCAGATATTTGTTTAAAAGAAAAGAAATACGGCCAGGAGAATTTCAGACCGTAGATCTTGATTTTCCAAGCACAGCAGAAAGCTACAAACTATACTCCCAGAGGGTAATCTCTGGTGATATCAAAGAATGTGTATGCCGAGCTCCCGACACTCCTTATGATGAGACTGCATATTCAAACATTCCAATGACTCCTTATGAGCTTCCCGATGGCCAAACAATTGAAATTGGAGCTGATAGATTCAAGATTCCTGATGTTCTTTTTAACCCATCTCTGGTTCAGACAATTCCCGGCATGGAGAGCTTTCATGAGATTGCCCACTCTGTTCGTGGTTTGCCCCAAATGGTTATAGAAAGTATCAATAGATGTGATGTTGATATTCGAAGAGAACTCTTTAGCAGCATTCTGCTTGCAGGGGGAACAGCATCAATGCAGCAGTTGAAGGAACGTCTTGAAAAAGATTTGCTGGAGGAGTCTCCTCAAGGCGCTAGAGTGAAAGTATTGGCTAGTGGAAATGCAACTGAAAGAAGATTCAGTGTTTGGATAGGAGGAAGTATATTGGCATCTCTTGGTTCATTCCAGCAGATGTGGTTCTCCAAATCTGAGTATGAAGAGCATGGTGCTTCTTACATTCAAAGAAAGTGCCCATGA 1323 0.4331 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMEVDEPANPDQNVGGVGDLKNNVEKNKGKRKLYVGTQALGYRRDHMEVLSPLKDGVVLDWDIVDNIWDHAFRECLLIDPQEHPMLLAEPCSNTQQQRERTAEIMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVLQKAVATSPIGGEFLTDCLMKSLESKGIVIKPRYLFKRKEIRPGEFQTVDLDFPSTAESYKLYSQRVISGDIKECVCRAPDTPYDETAYSNIPMTPYELPDGQTIEIGADRFKIPDVLFNPSLVQTIPGMESFHEIAHSVRGLPQMVIESINRCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQGARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00627 440 SMART actin_3 7 440 IPR004000 -
Pte16g00627 440 PANTHER ACTIN 9 433 IPR004000 -
Pte16g00627 440 Pfam Actin 4 439 IPR004000 -
Pte16g00627 440 PRINTS Actin signature 163 182 IPR004000 -
Pte16g00627 440 PRINTS Actin signature 28 37 IPR004000 -
Pte16g00627 440 Gene3D Actin; Chain A, domain 4 205 318 - -
Pte16g00627 440 CDD NBD_sugar-kinase_HSP70_actin 10 199 - -
Pte16g00627 440 SUPERFAMILY Actin-like ATPase domain 169 439 IPR043129 -
Pte16g00627 440 FunFam Actin-related protein 4 1 178 - -
Pte16g00627 440 Gene3D - 179 379 - -
Pte16g00627 440 Gene3D - 390 440 - -
Pte16g00627 440 SUPERFAMILY Actin-like ATPase domain 5 176 IPR043129 -
Pte16g00627 440 Gene3D - 4 178 - -
Pte16g00627 440 FunFam actin-related protein 4 382 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00627 Pte-Chr16 17173683 17185185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00627 1 439 Cytoskeleton Gene Families AT5G09810 39.140 1.91e-95 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00627 K11340 - zju:107417842 795.808