Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00581 ATGACTGATTTTCAGCCGCTACAACAGAAGCCTGAATCAACTGATGAAACCTGCTCAGAGTTTGAACGGGGTTTTGATGAATTAATGCGAGAGAATTTGGATGATTGCATATCATTTCCTTCATGTAGCTCCACGCGCAGTCCAGATGATGATGATGATGAGGAAGGTGAACAGCTTGTTCGGAGGAGAAGGAGGTCTGACCTTGAAGGGGATGATTTGGCGGAGTCTTCAGCTGCAAGAAGGCGTCATACACGAATATTGAGCCGCTGGGCTGCAAGGCAGGCACAGGAGATGATAACAACTATTGAGAGGAGGAATCGAGAATCTGAGTTAATGGCACTTGCTGGGTTACACACAGTTTCAATGCTGGACTCTTCCTTTTTGAGGGGGTCTCAGTCTCCAACATCAGGTCAGCAGGGCTCTGTTGAGAGGCCTAGCACTCAGGCTTCAGCTATTTTGCAAATGTGGCGGGAATTGGAGGATGAGCAGTTGTTGAATCGGGCAAGTGAAAGAATGACGGGAAGGCTGAGACAACACAGGAGTGTTGAGTCTAATACTCATACTTCAAGTATAAATTTGTCAGATAGTCAGGGGAGTGAGAACCCAGGAAGTCTAGGAGATCCTAGTGAAAGTGAAAATGATTATGGGACTTGGTCACAAGATCAGATTGGCTCACAGAATGATGAAAGAGATAACCGATCTAGCAGGGAACAATCCCCTGATATTGGTGATGCAGAAAGGGAGAGAGTCAGACAAATTGCTAGGGGATGGATGGAGAGTGGCACCAGTGATCTTTCATCTAATGTTACTCATAGGACTAATGGTCCCAGAGCTGAATGGCTTGGTGAAACAGAACGTGAAAGGGTGAGAATTGTCAGGGAATGGGTGCAAATGACAAGTCAGCAAAGAGGATCTTGTGGTGGTCGGAGGGATATTCAAGCTAGGGGACGTGGTTCTCAAGCTGATCGAGTGGGTGATGCAGACAATGATGAAGGCCAACCAGAGCATGTCCACAGGGACATGAGGTTTCGTGGAAGGCAAGCGCTACTTGATTTGCTTATGAGGATAGAGAGGGAAAGACAAAGGGAGCTTCAGGCTCTGGTAGAACACCGAGCTGTCTCAGATTTTGCTTATCGCAATCGCATTCAGTCGTTACTAAGAGGGAGATTTCTGCGAAATGAAATAACTGTCGAAGAGGAGATACCTCTTCCAATGGCTGCACCTGAGTTAGTTCAATTAAGACAGCGGCATACTGTATCTGGTTTAAGGGAAGGGTTTCGCTCAAGATTAGAAAATTTTGCATGTGTTCAAGATGGTATCCATTTTGATACTACATCTGATAATGATGCTGGCAGTTCAAGGAATGATGAGAACCAATCAATGAATTCTCTGACTACTAGAGAACATAATCTGGAACAGGTCCAAATCAGGAGTTCTGAAACTGATGTCAGAGAATTGCCTGATCAAATGGGGACATTTCTAAGTAGTACAACTGGTGAGAGTTTGGAATCGCAGAGAACTGTTAATCAGACGCAAAATTTGCAGGAGCAGACTCCTGAAGCTGTGGAAAGACAGTGGCAGAGAACAGCAAATGGTGCATTGAATCAATGGGGGGATAACAACACTGAAGATACGGATAGAAGTTGGCAAGAAAATGCAGCGAGTACTGGGCCCCAGGATGCTTCGGTAAATGAACAGGGACAACATCAGGCACGAGAAGCCAGGGGAATCTGGCATGAGGATTCCTCAAGGGAGGGTGCTGGGAACTGGTCTGAAGAACTTGGTGGGCCCTTAAGGATTCACCATGGTATTCACTTGAGGAGATTGAATAGATTTCATCCACCTGACGATGATAATGTTTACAGTATGGAGCTTCGAGAACTTCTGAGCAGGAGAAGTGTCTCCAATCTTCTACGCAGTGGCTTCCGGGAAAGTTTGGACCAATTAATACAGTCATATGTTGAAAGGCAAGGTCAGGCCCCCATTGATTGGGATTTGCATAGAAACATGCCAACAACTTCCCCTGCGTCACCAGAGCTGGACGTAGATATTCAAAGAGATGACCAGAATGACGATCAAAGTGGGGCTATTAACAGACCATCGCTGGTCTTGCCATCACCTCCAGTGCCTCCACCACAGCCACTATGGCACCATGACTTACATGACACTGGCTGGTCTCGTCACAGCATTCACCTTTCTGAAAATGAGTGGGAGATGATTAATGATCTGAGAGCAGACATGGCAAGACTTCAGCAGGGCATGAGTCACATGCAGAGGATGTTAGAAGCCTGCATGGTTATGCAGCTGGAGTTGCAACGTTCTGTCAGACAGGAAGTTTCTGCTGCCTTGAATCGATCTGTTGGTGAAAAAGGGATGGTTGTGGAGACATCAGAGGATGGATCTAAATGGGTTCAAGTTAAACAAGGAATTTGCTGTGTTTGTTGTGACAATCATATTGATTCACTTCTGTACAGATGTGGGCACATGTGCACTTGCTCTAAGTGTGCCAATGAGTTGGTTCGTGGAGGAGGCAAGTGCCCTCTTTGCCGAGCGCCCATTGTTGAGGTGGTCCGAGCATATTCTATATTGTAA 2592 0.4618 MTDFQPLQQKPESTDETCSEFERGFDELMRENLDDCISFPSCSSTRSPDDDDDEEGEQLVRRRRRSDLEGDDLAESSAARRRHTRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQQGSVERPSTQASAILQMWRELEDEQLLNRASERMTGRLRQHRSVESNTHTSSINLSDSQGSENPGSLGDPSESENDYGTWSQDQIGSQNDERDNRSSREQSPDIGDAERERVRQIARGWMESGTSDLSSNVTHRTNGPRAEWLGETERERVRIVREWVQMTSQQRGSCGGRRDIQARGRGSQADRVGDADNDEGQPEHVHRDMRFRGRQALLDLLMRIERERQRELQALVEHRAVSDFAYRNRIQSLLRGRFLRNEITVEEEIPLPMAAPELVQLRQRHTVSGLREGFRSRLENFACVQDGIHFDTTSDNDAGSSRNDENQSMNSLTTREHNLEQVQIRSSETDVRELPDQMGTFLSSTTGESLESQRTVNQTQNLQEQTPEAVERQWQRTANGALNQWGDNNTEDTDRSWQENAASTGPQDASVNEQGQHQAREARGIWHEDSSREGAGNWSEELGGPLRIHHGIHLRRLNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGQAPIDWDLHRNMPTTSPASPELDVDIQRDDQNDDQSGAINRPSLVLPSPPVPPPQPLWHHDLHDTGWSRHSIHLSENEWEMINDLRADMARLQQGMSHMQRMLEACMVMQLELQRSVRQEVSAALNRSVGEKGMVVETSEDGSKWVQVKQGICCVCCDNHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVVRAYSIL* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00581 863 MobiDBLite consensus disorder prediction 226 247 - -
Pte16g00581 863 MobiDBLite consensus disorder prediction 493 569 - -
Pte16g00581 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 797 861 IPR013083 -
Pte16g00581 863 SUPERFAMILY RING/U-box 803 856 - -
Pte16g00581 863 MobiDBLite consensus disorder prediction 493 591 - -
Pte16g00581 863 ProSiteProfiles Zinc finger RING-type profile. 811 850 IPR001841 -
Pte16g00581 863 MobiDBLite consensus disorder prediction 302 337 - -
Pte16g00581 863 MobiDBLite consensus disorder prediction 172 247 - -
Pte16g00581 863 MobiDBLite consensus disorder prediction 37 80 - -
Pte16g00581 863 Coils Coil 740 760 - -
Pte16g00581 863 MobiDBLite consensus disorder prediction 444 463 - -
Pte16g00581 863 MobiDBLite consensus disorder prediction 183 225 - -
Pte16g00581 863 MobiDBLite consensus disorder prediction 572 587 - -
Pte16g00581 863 Pfam Zinc finger, C3HC4 type (RING finger) 808 855 - -
Pte16g00581 863 MobiDBLite consensus disorder prediction 56 80 - -
Pte16g00581 863 MobiDBLite consensus disorder prediction 315 337 - -
Pte16g00581 863 MobiDBLite consensus disorder prediction 665 709 - -
Pte16g00581 863 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 112 863 - -
Pte16g00581 863 MobiDBLite consensus disorder prediction 127 148 - -
Pte16g00581 863 CDD mRING-HC-C3HC5_NEU1 811 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00581 Pte-Chr16 11229432 11235181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00581 811 857 C3H Transcription Factor Family AT3G06140 42.553 1.55e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00581 - - cave:132186690 1226.08