Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00580 ATGGGAAGGACTCCCTGCTGTGACAAGAAGGGCTTGAAGAAAGGACCATGGACGCCTGAAGAGGATGATTTTCTTGTTAATTATATTCAGAAAAATGGTGGACATGGAAGTTGGCGTTCCCTTCCCAAGATGGCAGCCACCGTGAACGACGGGGAGGACGTGATGAAGATGGAGCGTGAAATACTTTCTCCTCCAGCCAAGCCATTAGGTCGAGAAGAAGAGAAGAAGAAGCATGTTCAAGGAATAAAGACACAGCAACTAACGTATCACAAGGTTTTGCAAGAAAGGGATAAAGAAGCGGGTAAGGTACCTACTTGTAAGGGAGAAGGATGA 333 0.4625 MGRTPCCDKKGLKKGPWTPEEDDFLVNYIQKNGGHGSWRSLPKMAATVNDGEDVMKMEREILSPPAKPLGREEEKKKHVQGIKTQQLTYHKVLQERDKEAGKVPTCKGEG* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00580 110 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pte16g00580 110 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 40 IPR017930 -
Pte16g00580 110 CDD SANT 16 44 IPR001005 -
Pte16g00580 110 MobiDBLite consensus disorder prediction 63 82 - -
Pte16g00580 110 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 45 - -
Pte16g00580 110 MobiDBLite consensus disorder prediction 63 81 - -
Pte16g00580 110 Pfam Myb-like DNA-binding domain 14 44 IPR001005 -
Pte16g00580 110 Gene3D - 11 96 - -
Pte16g00580 110 SUPERFAMILY Homeodomain-like 11 48 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00580 Pte-Chr16 11149517 11153520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00580 1 75 MYB Transcription Factor Family AT3G61250 57.143 1.38e-21 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte16g00580 Myb_DNA-binding 1.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00580 K09422 - qsa:O6P43_017601 105.145