Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00574 ATGGTTCATCGCTGCTGCAGCAAACAGAAAGTGAAGAGGGGGCTATGGTCTCCCGAAGAAGATGAGAAACTAATCAATTACATAACAAAACATAGCCATGCTTCTTGGAGTTCTGTTCCTAAATTAGCAGGTTTGCAGAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTGAGACCTGATCTCAAGAGGGGTTCATTTTCTGCACAAGAAGAGAGAACCCTAATCGATGTTCATAGAATTCTAGGAAACAGGTGGTCTCAAATAGCAAAGCATTTGCCGGGAAGAACAGACAATGAGGTCAAGAACTTCTGGAACTCATGCATCAAGAAGAAACTCATGCTCAAGGCATAG 360 0.4222 MVHRCCSKQKVKRGLWSPEEDEKLINYITKHSHASWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSAQEERTLIDVHRILGNRWSQIAKHLPGRTDNEVKNFWNSCIKKKLMLKA* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00574 119 CDD SANT 68 108 IPR001005 -
Pte16g00574 119 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pte16g00574 119 PANTHER MYB DOMAIN PROTEIN 55 3 116 - -
Pte16g00574 119 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Pte16g00574 119 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pte16g00574 119 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Pte16g00574 119 FunFam Myb transcription factor 68 115 - -
Pte16g00574 119 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Pte16g00574 119 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Pte16g00574 119 CDD SANT 16 60 IPR001005 -
Pte16g00574 119 Gene3D - 5 66 - -
Pte16g00574 119 FunFam MYB transcription factor 5 65 - -
Pte16g00574 119 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pte16g00574 119 Gene3D - 68 115 - -
Pte16g00574 119 SMART sant 65 113 IPR001005 -
Pte16g00574 119 SMART sant 12 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00574 Pte-Chr16 10852289 10852774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00574 1 116 MYB Transcription Factor Family AT3G12720 84.483 1.79e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte16g00574 Myb_DNA-binding 6.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00574 K09422 - qsu:112012379 234.187