Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00565 ATGTTGAGAAAATCAGGGTTGGGGATGGAGGCTGAGAAAAGGCATGTCAAGAAACCCGCACAGGTTAGCTCAAGGAAAGGGTGCATGAGAGGCAAAGGAGGCCCTGAGAATGCTGCCTGCACATACAAAGGTGTGCGTCAGAGGACTTGGGGGAAATGGGTTGCCGAAATCCGCGAGCCAAATCGCGGTGCACGCCTTTGGCTTGGGACATTCGGCACGTCCCATGATGCTGCCATGGCTTATGATGCCGCTGCACGTAAACTTTATGGTTCAGATGCAAAGCTCAATCTACCAGACCAGTCTAGCTCATCTGGCACAGGTAGTGGCACGTCTGACTCTGATGATTATCACTGTAAGAGGACCCCTGCCTGCAGCTCTGATCTACAGGGCGCTGCACAAATGAAAAGCCATGAGAGCCACACTTTTCTTCCGCAGCCTGATCCCAATCAGCTTCAGAATTTTTCAGATATCCATAATGCTTCTGTCTTTGATTCCTTTCTGGCTAATGATCAGGTTGTAACATTGTATAGCAGCGACCCGATTGTATCTGTCCCCTTTCAAAACAATACTTATGACATGAATGATGTGAAACCTGGGGATGACCGGATGAATGCGAGCAATATCGATGAGGGGTTTGGTCCATTTTGGAGCACCATAAATAAAACAAATGCGAAGTTGCCTCTGTGTGATGAGTCTATGTGGGCAGAGGCAGCCATGTCTATCGATTTTCCGGTATTAGATGACATCCTGAAATTCGCTGATAACAACAACTTAGTGGATGTGAGTGGCAGCTGTTACACTCCACAATCTCCATGGTGCATGTGA 825 0.48 MLRKSGLGMEAEKRHVKKPAQVSSRKGCMRGKGGPENAACTYKGVRQRTWGKWVAEIREPNRGARLWLGTFGTSHDAAMAYDAAARKLYGSDAKLNLPDQSSSSGTGSGTSDSDDYHCKRTPACSSDLQGAAQMKSHESHTFLPQPDPNQLQNFSDIHNASVFDSFLANDQVVTLYSSDPIVSVPFQNNTYDMNDVKPGDDRMNASNIDEGFGPFWSTINKTNAKLPLCDESMWAEAAMSIDFPVLDDILKFADNNNLVDVSGSCYTPQSPWCM* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00565 274 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Pte16g00565 274 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Pte16g00565 274 MobiDBLite consensus disorder prediction 95 151 - -
Pte16g00565 274 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Pte16g00565 274 CDD AP2 40 100 IPR001471 GO:0003700|GO:0006355
Pte16g00565 274 MobiDBLite consensus disorder prediction 95 112 - -
Pte16g00565 274 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 16 207 - -
Pte16g00565 274 MobiDBLite consensus disorder prediction 126 151 - -
Pte16g00565 274 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Pte16g00565 274 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Pte16g00565 274 MobiDBLite consensus disorder prediction 1 33 - -
Pte16g00565 274 MobiDBLite consensus disorder prediction 1 18 - -
Pte16g00565 274 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Pte16g00565 274 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Pte16g00565 274 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00565 Pte-Chr16 10399317 10400999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00565 17 99 AP2-EREBP Transcription Factor Family AT1G75490 80.723 1.62e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte16g00565 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00565 - - gmx:100797850 231.106