Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00564 ATGGCCCCTAGTTTTGATTCATTCAGGGTTGACTGTCACAATCAAAATGATGATCGCTATGAATCAATTGGCATTCATCTTTCAACTGCAGCTCGCTATCACAATCGGTTTAATACCATGATGTGGAGCAATGCTTCAAGCTTCATCTTCCCCTTCGCCAATGAAACCAGGAACAAGAGGTTAAAGAGAAAAAACACAAGTGTCACTGAGTCGCTTAGACATAGCGGTATGAATCTTTATACCGGAAGAGGAAGCAATTTATCTCACAGTGTCTGCAACGGCAGTAACCGCAGTGGCAGCCTGGGCAATGTTAATACAGAGCCGAAGCTTCATTTCCGAGACCATATCAAGATTTACACTCAGAGATACTTAGCAGCGGAAGCTGTTGAAGAAGCAGCGGCGGCTATGGCTAATTCTGAGGAAGGCGAGAGTGAGAAAGACGGGTGTGCTGACGGAATGAAGCTTGTGCAACTTCTGATTGCTTGTGCTGAAGCTGTGGCTTGCCGTGACAAAAGTCACTCCTCCATTTTGCTATCTGATCTGCGAGCTAATGCTTTGGTGTTCGGTTCCTCCTTCCAGCGAGTTGCTTCTTGCTTTGTCCAAGGCCTAGCTGACAGGCTCGCAATGATTCAACCGCTTGGAGCAGTGGGAATTGTTTCACCTATAATGAATATCATGGATGGTGCATCAGAGAAGATGGAGGAAGCTTTACGCCTGGTCTATGAAATTTGCCCGTACATTAAGTTTGGTCACTTTGTGGCAACTTCAACGATATTGGAAGCCTTTGAGGGTGAGAGTTTTGTCCATGTGGTTGATCTGGGGATGACCCTTGGTTTATCACATGGTTACCAATGGCGAGGATTGATCCAGAGCCTTGCAAATCGCTCTGGTAAACCTCCTTGCCGTCTTAGAATAACTGGTGTCGGTCTATGTGTTGAGAGGTTGGATTCCATTGGAGATGAGCTTAAAGCATATGCAAAAGAATTCGGAATAAACTTGGAGTTCTCAGTTGTGCAAAGAAATTTGGATACCCTGAAACGCGAAGACATTAAAATCGACGAGGGAGAAGTTCTTGTGGTGAACAGCATACTTCAACTACACTGTGTAGTTAAAGAGAGTCGTGGAGCTTTGAATTCAGTGCTGCAGATGATTCATAGACTATCGCCAAAGCTGTTTGTTTTGGTTGAACAGGATTCCAGCCACAATGGACCTTTCTTTCTTGGCAGATTCATGGAAGCACTGCACTATTACTCTGCAATTTTTGATTCCCTGGATGCTATGTTGCCCAAGTATGACACAAGACGCGCCAAGATGGAACAGTTTTACTTTGCCGAGGAGATAAAGAACATAGTGAGCTGTGAGGGGCCAGCAAGGGTGGAGAGACATGAGAGGGTGGACCAGTGGAGGAGGAGGATGAGCAGGGCTGGGTTTCAGGCTGCACCAATCAAGATGATGGCTCAGGCGAAACAATGGCTCAGCAAGAACGAGATTTCTAAAGGCTATACCATTTTGGAAGAGAGGGGATGCTTGGTGCTAGGCTGGAAATCAAGGCCAATTGTTGCAGCGTCTTGCTGGAAATGCTAG 1584 0.4596 MAPSFDSFRVDCHNQNDDRYESIGIHLSTAARYHNRFNTMMWSNASSFIFPFANETRNKRLKRKNTSVTESLRHSGMNLYTGRGSNLSHSVCNGSNRSGSLGNVNTEPKLHFRDHIKIYTQRYLAAEAVEEAAAAMANSEEGESEKDGCADGMKLVQLLIACAEAVACRDKSHSSILLSDLRANALVFGSSFQRVASCFVQGLADRLAMIQPLGAVGIVSPIMNIMDGASEKMEEALRLVYEICPYIKFGHFVATSTILEAFEGESFVHVVDLGMTLGLSHGYQWRGLIQSLANRSGKPPCRLRITGVGLCVERLDSIGDELKAYAKEFGINLEFSVVQRNLDTLKREDIKIDEGEVLVVNSILQLHCVVKESRGALNSVLQMIHRLSPKLFVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIKMMAQAKQWLSKNEISKGYTILEERGCLVLGWKSRPIVAASCWKC* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00564 527 ProSiteProfiles GRAS family profile. 146 526 IPR005202 -
Pte16g00564 527 Pfam GRAS domain family 155 526 IPR005202 -
Pte16g00564 527 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 126 521 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00564 Pte-Chr16 10370967 10372723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00564 147 527 GRAS Transcription Factor Family AT1G66350 38.083 4.02e-79 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte16g00564 GRAS 3.1e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00564 - - pop:7463101 724.161