Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00540 ATGACTACAACAGAGGATCCAACATCTTTGCTGGTCGGCCAATTGGTTGAGTGTGTGAAGGAGATTGGTGCTTTACCTGAATGTCAAAATGTTTGTAAGGAAATGTATGGGAATTTGGTTAGGAGGGTGAAATTGTTGAGTCCTCTGTTTGAGGAATTGAGGGACAGTGATGAATTGTTGAGTGAAGAAGAGCTTCAAGCCTTTAAATCACTCAAGATTGCTTTGGATTCTGCCAAGCAACTTCTCAAGCTGGTCAACCATGGGAGTAAGCTCTTTCAGGCTTTTCAGTGGGACAAGACAGCAGCTGAGTTTCAATATGTAACAGAAGAAATTGAATCGACATTGACTGAAATTCCATATGATAACCTTGACATATCTGAAGAAATTAGGGAACAGATTGAACTTGTGCATGCTCAGTTTAAAAGAGCTAAGGCAAGAGTGGAATCAACTGATATGCAGCTAGATACGGATTTAGCAATAGCAGTGAGGGAAAGGGATCCCGATCCTGCTATACTCAAAAGACTTTCTGAAAAATTGCATCTCAAGACCATAAATGATCTCAAGAAAGAGTCCGTTGCATTTCATGAATTGGTTATTGCTACTGGTGGTGAACCTGGAGACTTACTGGAACAGATGGCAACCATTCTCAGGAAACTCAAGGACTGTGTCCTCACACAAACTCCTGAAGCTGATACCTTTGAGGGTGATAAAAGTTCAGTTAAACACCGGTCCCCTGTTATCCCAGATGATTTTCGGTGCCCCATCTCCCTTGAACTGATGAAAGATCCTGTTATTGTCTCAACTGGACAGACCTATGAAAGATCTTGCATTCAGAAATGGTTGGATGCAGGGCACAAAACATGCCCCAAGACACAGCAAACGCTGCTGCACACAGCACTAACTCCTAACTATGTGCTGAAGAGTCTGATTGCTTTATGGTGTGAAAGCAATGGTATTGAACTGCCCAAAATGCAAGGGAGCTGCAGAAGCAAAAGATCAGGAAGCAGTATATCAGATTGTGATAGGGCTGCTATAGATGGTTTATTAGAAAAGCTAGCAACTGGTAATCCAGAACAACAAAGAGCAGCTGCTGGTGAGCTCCGCCTGCTGGCCAAAAGGAATGCTGATAATAGAATATGTATAGCTGAGGCTGGAGCTATTCCACTTCTTGCAGAACTACTTTCCTCTACAGATCCTCGAACCCAAGAGCATGCTGTTACCGCACTTCTTAATTTGTCCATTAATGAGGGCAACAAGGGACTTATTGTGAATGCAGGAGCCATACCAGACATTGTTGATGTGCTGAAAAACGGTAGCATGGAGGCTAGAGAGAATGCAGCTGCAACTCTCTTCAGTTTATCGGTTGTAGATGAGAACAAAGTTGCAATAGGAGCAGCTGGGGCTATCCCCGCTCTTATAAAATTACTTTGTGAAGGTACTCCAAGAGGTAAGAAAGATGCTGCTACAGCCATTTTCAATCTTTCAATCTACCAAGGAAACAAGGCAAGAGCTGTAAAGGCCGGCATAGTATTTCCACTCATGAGATTGCTGAAGGATGCTGGTGGGGGCATGGTTGATGAAGCCCTCGCTATATTGGCAATACTTGCCTGCCATTCAGAAGGCAAGGTTGCAATCAGTCACGCTGATCCAATACCTGTTCTGGTTGAGGTTATAAGAACGGGTTCACCACGTAACCGGGAGAATGCTGCCGCTCTGCTTTGGTCACTATGCACTGGTGATCTGAATCAATTGAAACTAGCGCGAGAGCTTGGTGCAGAAGCAGCACTGAAGGATTTAACAGAGTGTGGCACTGATAGGGCAAAAAGAAAAGCTGGGAACATATTAGATCTTCTTCAGAGAATCGAAGTTTCTCTCAGTCCAGAAAATTCAATGGCTCAAGTAGCTTCACTTTCATTTCCGTCAATTAATAATGTATTGTAG 1941 0.4343 MTTTEDPTSLLVGQLVECVKEIGALPECQNVCKEMYGNLVRRVKLLSPLFEELRDSDELLSEEELQAFKSLKIALDSAKQLLKLVNHGSKLFQAFQWDKTAAEFQYVTEEIESTLTEIPYDNLDISEEIREQIELVHAQFKRAKARVESTDMQLDTDLAIAVRERDPDPAILKRLSEKLHLKTINDLKKESVAFHELVIATGGEPGDLLEQMATILRKLKDCVLTQTPEADTFEGDKSSVKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCESNGIELPKMQGSCRSKRSGSSISDCDRAAIDGLLEKLATGNPEQQRAAAGELRLLAKRNADNRICIAEAGAIPLLAELLSSTDPRTQEHAVTALLNLSINEGNKGLIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVVDENKVAIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVFPLMRLLKDAGGGMVDEALAILAILACHSEGKVAISHADPIPVLVEVIRTGSPRNRENAAALLWSLCTGDLNQLKLARELGAEAALKDLTECGTDRAKRKAGNILDLLQRIEVSLSPENSMAQVASLSFPSINNVL* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00540 646 Pfam Armadillo/beta-catenin-like repeat 374 413 IPR000225 GO:0005515
Pte16g00540 646 Pfam Armadillo/beta-catenin-like repeat 457 495 IPR000225 GO:0005515
Pte16g00540 646 FunFam RING-type E3 ubiquitin transferase 462 624 - -
Pte16g00540 646 SUPERFAMILY ARM repeat 344 616 IPR016024 -
Pte16g00540 646 CDD MLKL_NTD 13 141 - -
Pte16g00540 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 320 IPR013083 -
Pte16g00540 646 FunFam RING-type E3 ubiquitin transferase 247 320 - -
Pte16g00540 646 CDD RING-Ubox_PUB 248 300 IPR045210 -
Pte16g00540 646 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Pte16g00540 646 SMART arm_5 456 496 IPR000225 GO:0005515
Pte16g00540 646 SMART arm_5 374 414 IPR000225 GO:0005515
Pte16g00540 646 SMART arm_5 538 578 IPR000225 GO:0005515
Pte16g00540 646 SMART arm_5 497 537 IPR000225 GO:0005515
Pte16g00540 646 SMART arm_5 415 455 IPR000225 GO:0005515
Pte16g00540 646 Pfam U-box domain 247 317 IPR003613 GO:0004842|GO:0016567
Pte16g00540 646 SUPERFAMILY RING/U-box 243 323 - -
Pte16g00540 646 Gene3D - 330 639 IPR011989 -
Pte16g00540 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Pte16g00540 646 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Pte16g00540 646 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Pte16g00540 646 FunFam RING-type E3 ubiquitin transferase 344 461 - -
Pte16g00540 646 PANTHER U BOX DOMAIN-CONTAINING 36 619 - -
Pte16g00540 646 Gene3D - 10 120 IPR036537 GO:0007166
Pte16g00540 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00540 Pte-Chr16 9694284 9697328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00540 11 622 U-box Gene Family AT3G54850 67.537 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00540 - - qsa:O6P43_008674 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00540 16 9694284 9697328 Pte16g00540 16 9694284 9697328 RCT