Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00527 ATGGAATCCGTAGCTGAGACCTACAGCAATGGTGTAGACGAGTCTTTGAATTTCTGCAATAGCAGTAACGTGACTGCTGACCCATTGAACTGGGGTATGATGGCAGAGTCCATGAAGGGCAGTCACCTTGACGAGGTGAAACGCATGGTTGAGGAGTATCGCAAGCCAGTGGTGAAGCTTGGTGGTAAGACCTTGACCATATCACAAGTAGCAGCAATTGCCAACCATGATGGTGGGGTGAAGGTTGAGCTGTCAGAGGAGGCTCGAGCTGGTGTCAAGGCCAGCAGTGATTGGGTCATGGACAGCATGAACAAAGGGACGGATAGCTATGGTGTCACAACTGGTTTTGGTGCGACCTCACATAGGAGAACCAAGGAAGGAGGTGCTTTGCAGAAAGAGCTAATTAGATTTTTGAATGCTGGGGTCTTTGGAAATGGGACAGAGTCCAGTCACACTCTGCCTCACACAGCCACAAGGGCAGCTATGTTGGTCAGGATCAACACACTTCTTCAAGGATACTCAGGCATCAGATTTGAGATCTTAGAAGCCTTATCCAAATTTCTCAACAAAAACATCACTCCATGCCTGCCACTAAGAGGCACAATCACTGCCTCAGGTGACTTGGTCCCTCTATCCTATATTGCTGGCCTTTTGATTGGTAGGCCTAATTCTAAACCTGTTGGACCAAACGGACAGAAGCTCAGCCCCACAGAGGCTTTTCAACTGGCAGGAATTGATGGTGGGTTTTTTGAATTGCAACCAAAGGAGGGGTTAGCACTTGTGAATGGCACTGCAGTTGGTTCTGGCTTGGCTTCTATGGTTCTTTTTGAGGCCAACATTCTAGCTGTTCTATCAGAAATTATCTCAGCCATTTTTGCAGAAGTCATGCAAGGGAAACCAGAATTTACAGACCACTTGACACACAAATTGAAACATCACCCTGGCCAAATTGAAGCAGCAGCTATTATGGAACACATTTTGGATGGTAGCTCTTACATTAAGGCAGCAAAGAAGTTGCATGAGGTAGATCCTTTACAGAAGCCTAAGCAAGACAGATATGCTCTTAGAACATCTCCACAATGGCTAGGACCCCAGATTGAAGTGATTAGGTCTTCAACAAAAATGATCGAAAGGGAGATCAACTCCGTGAATGATAACCCATTGATTGATGTTTCAAGAAACAAGGCTCTTCATGGAGGAAACTTCCAAGGAACTCCAATTGGAGTTTCTATGGATAACACCCGTTTAGCCATTGCTTCAATTGGCAAACTTTTGTTTGCTCAGTTCTCAGAGCTTGTCAATGACTTCTACAACAATGGACTGCCTTCAAACCTTTCTGGAGGTCCCAATCCAAGCTTGGATTATGGTTTCAAAGGTGCTGAAATTGCAATGGCATCATATTGCTCAGAACTCCAATTCCTAGCCAATCCTGTGACTAACCACGTCCAAAGTGCTGAGCAGCACAACCAAGATGTCAATTCCTTAGGTTTGATTTCCTCTAGGAAAACAGCCGAAGCTGTGGACATACTGAAGCTTATGTCTTCCACCTTCTTGGTTGCTTTGTGTCAAGCCATTGATTTGAGGTATTTGGAGGAAAATTTGAAGAACACTGTGAAGAACACAGTCAGTCAAGTTGCGAAGAAGGTTTTGACTATGGGAGTGAACGGTGAGCTCCATCCCTCAAGGTTCTGTGAGAAAGACTTGCTCAAAGTGGTTGACCGTGAATATGTCTTTGCCTACATTGACGACCCCTGCAGTGCAACCTATCCTTTGATGCAAAAGCTTCGACAAGTGCTAGTTGATCATGCGTTGAACAATGGTGAAAATGAAAAGAATGCAAGCACTTCCGTTTTCCAAAAGATTGTAGCTTTTGAAGAAGAACTCAAGACCCTTTTGCCCAAAGAAGTTGACAGTGCCAGGGCTGAAATTGAAAATGCGAATGCTGCAATTCCCAATAAGATCAAGGAATGCAGGTCTTACCCATTGTACAGATTTATCAGGGAGGAACTTGGGACATCATTGCTGACAGGTGAGAATGTCCGATCACCTGGTGAAGATTGTGACAAGGTTTTCTCTGCAATGTGTGCTGGGAAATTGATTGATCCAATTATTGAATGTTTGAAGGAGTGGAATGGTGCTCCTCTTCCAATATGTTAG 2157 0.446 MESVAETYSNGVDESLNFCNSSNVTADPLNWGMMAESMKGSHLDEVKRMVEEYRKPVVKLGGKTLTISQVAAIANHDGGVKVELSEEARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKEGGALQKELIRFLNAGVFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEALSKFLNKNITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKPVGPNGQKLSPTEAFQLAGIDGGFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEIISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLSGGPNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRYLEENLKNTVKNTVSQVAKKVLTMGVNGELHPSRFCEKDLLKVVDREYVFAYIDDPCSATYPLMQKLRQVLVDHALNNGENEKNASTSVFQKIVAFEEELKTLLPKEVDSARAEIENANAAIPNKIKECRSYPLYRFIREELGTSLLTGENVRSPGEDCDKVFSAMCAGKLIDPIIECLKEWNGAPLPIC* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00527 718 Coils Coil 636 656 - -
Pte16g00527 718 FunFam Phenylalanine ammonia-lyase 265 568 - -
Pte16g00527 718 FunFam Phenylalanine ammonia-lyase 531 652 - -
Pte16g00527 718 CDD PAL-HAL 63 528 IPR001106 -
Pte16g00527 718 FunFam Phenylalanine ammonia-lyase 18 264 - -
Pte16g00527 718 PANTHER HISTIDINE AMMONIA-LYASE 24 718 IPR001106 -
Pte16g00527 718 Gene3D - 531 652 IPR023144 -
Pte16g00527 718 Gene3D Fumarase/aspartase (Central domain) 265 713 - -
Pte16g00527 718 NCBIfam phenylalanine ammonia-lyase 27 708 IPR005922 GO:0005737|GO:0006559|GO:0016841
Pte16g00527 718 SUPERFAMILY L-aspartase-like 27 718 IPR008948 GO:0003824
Pte16g00527 718 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 200 216 IPR022313 GO:0016841
Pte16g00527 718 Gene3D - 18 264 IPR024083 -
Pte16g00527 718 Pfam Aromatic amino acid lyase 65 540 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00527 Pte-Chr16 9176306 9179396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00527 11 719 Monolignol Biosynthesis Gene Families AT3G53260 81.523 0.0 1231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00527 K10775 - rcu:8273543 1259.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00527 16 9176306 9179396 Pte16g00527 16 9176306 9179396 RCT