Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00526 ATGGGGTTTGTGAGCACTTTACTGGGTATTCTTGGTTTTGTGATTGGAATTCCAGTTGGGATTTTGCTGGGGTTTTTCTTGTTCATTTATTCAGAACCAAAAGATGTTGAGGACCCGATAGTAAAACCATTCTCTGAATTGGACACAAGTGCCTTGCCGGATCTTCTTTCTGAAATTCCATTATGGATTAAAAGCCCTGATTATGAACGTGTTGACTGGTTAAACAAATTCGTGGCAGATATGTGGCCTTACCTTGACAAGGCAATATGTGCAAGGATTAGAAGCATGGCAGAACCTATGATGGCAGAATTCATAGGGAAATATCAAATTAAAGCAATCAAGTTTGAGAAATTGAGCCTTGGAACTCTTCCTCCTTCTATACATGGTCTCAAAGTCTGTGAGACTAATGAAAATCAATTAGTCATAGAACCAGTTTTCAAGTGGGCTGGCACTCCTAACATAGTGTTGTCATTGCGATTGCTATCTCTGCGAATAACAATTCAGTTGGTAGATTTTCAATTATTTGCTGCACCAAGGATAACTTTAAAACCCCTTGTGCCAACTTTCCCATGTTTTGGTAACATCGTAGTGTCTCTTATGGAGAAGCCCCATGTGGATTTTGGAATGAAAGTTCTGGGGGGAGACATAATGTCTGTACCTGGTCTCTACAGATTTGTTCAGGAGAGTATAAAAAAACAAATTGCAATGCTCTATCTCTGGCCTCATACCCTTCAAATTCCTATTCTTGAACCGTCGGCGCTGTGTGTAAAGAAGCCTGTTGGAATACTGCATGTGAATGTGGTTCGAGCACTGAAACTTTTGAAGAAGGACTTGTTGGGAATGTCTGATCCGTATGTCAAACTAAGCTTGACTGGAGACAAGTTCCCAGCCAGAAAAACGACCATCAAGAAGAAAACTTTGAATCCTGAATGGAATGAGAAGTTCAAGCTTGTTGTTAAGGAACCCCAAACACAAGTTCTTCAACTACAAGTGTATGACTGGGACAAGGTTGGAGGACATGACAGGTTGGGAATGCAGTCAGTTCCTCTTAAATTTCTAACTCCATATGAAACAAAAGAATTTACACTTGATTTACTCAAAGACACAAATGTCAGCGATAAAAAGCAAAGAGGGCAAGTTGTGGTTGAGATGACTTTCGTTCCTTTCAAAGAAGATAGCAGCAAGTTTATTAGTCATTTGGAAGGTTACTCCAAAAAAGAAAGCGAAATCAGTCGTTCATCTGACGATCATGGTGTCCAAGGAACAGGTCTACTTTCAGTTTTGATCCATGGAGCAAAGGATGTTGAGGGAGAGCATCACAACAATCCTTATGCATTAGTCCTTTTTCGAGGCGAAAAGAAAAAGACAAAGATGATGAGAAGAACTCGTGACCCGCATTGGAACGAGGAATTCGAGTTCACACTTGAGGAGCCTCCTCTAAATGAGAAGATACATATTGAAGTTATAAGCAAATGGGGAAAGATCAAAGCTTTGTCAAAGGTCTTCAGTTTTCTAAAGGAATCACTAGGATATGTGGAGATTAATCTGGCAGATGTTGTTCATAATGATCGAATCAACCATCTATATCATCTTATTAATTCAAAGAATGGAAAGCTACACATTGAAATAGGATGGAAAATGATTTGA 1647 0.3947 MGFVSTLLGILGFVIGIPVGILLGFFLFIYSEPKDVEDPIVKPFSELDTSALPDLLSEIPLWIKSPDYERVDWLNKFVADMWPYLDKAICARIRSMAEPMMAEFIGKYQIKAIKFEKLSLGTLPPSIHGLKVCETNENQLVIEPVFKWAGTPNIVLSLRLLSLRITIQLVDFQLFAAPRITLKPLVPTFPCFGNIVVSLMEKPHVDFGMKVLGGDIMSVPGLYRFVQESIKKQIAMLYLWPHTLQIPILEPSALCVKKPVGILHVNVVRALKLLKKDLLGMSDPYVKLSLTGDKFPARKTTIKKKTLNPEWNEKFKLVVKEPQTQVLQLQVYDWDKVGGHDRLGMQSVPLKFLTPYETKEFTLDLLKDTNVSDKKQRGQVVVEMTFVPFKEDSSKFISHLEGYSKKESEISRSSDDHGVQGTGLLSVLIHGAKDVEGEHHNNPYALVLFRGEKKKTKMMRRTRDPHWNEEFEFTLEEPPLNEKIHIEVISKWGKIKALSKVFSFLKESLGYVEINLADVVHNDRINHLYHLINSKNGKLHIEIGWKMI* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00526 548 Gene3D C2 domain 424 547 IPR035892 -
Pte16g00526 548 ProSiteProfiles C2 domain profile. 404 529 IPR000008 -
Pte16g00526 548 Gene3D C2 domain 256 415 IPR035892 -
Pte16g00526 548 CDD SMP_SYT 60 248 - -
Pte16g00526 548 ProSiteProfiles C2 domain profile. 240 363 IPR000008 -
Pte16g00526 548 SMART C2_3c 262 365 IPR000008 -
Pte16g00526 548 SMART C2_3c 424 528 IPR000008 -
Pte16g00526 548 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 422 545 IPR035892 -
Pte16g00526 548 Pfam C2 domain 424 531 IPR000008 -
Pte16g00526 548 Pfam C2 domain 261 355 IPR000008 -
Pte16g00526 548 CDD C2 425 522 - -
Pte16g00526 548 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 390 IPR035892 -
Pte16g00526 548 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 545 IPR045050 GO:0008289
Pte16g00526 548 FunFam Synaptotagmin-2 isoform A 256 409 - -
Pte16g00526 548 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Pte16g00526 548 PRINTS C2 domain signature 278 290 IPR000008 -
Pte16g00526 548 PRINTS C2 domain signature 305 318 IPR000008 -
Pte16g00526 548 PRINTS C2 domain signature 327 335 IPR000008 -
Pte16g00526 548 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00526 Pte-Chr16 9099935 9103891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00526 260 353 C2H2 Transcription Factor Family AT4G05330 35.106 2.16e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00526 - - qsa:O6P43_008637 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00526 16 9099935 9103891 Pte16g00526 16 9099935 9103891 RCT