Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00523 ATGAATATAACATGGCTCCAAGTTTTTGAAGTAATAACTCGAGAACAAGGGTTTCAATTCTGTAGCTTGGGAAGTTTTGGTATTTCAAAGCAAAACAAGCTTCTTCTCCTATCCGTTTTGATTTCTCCGGGAAATCGAGAAGGAAAAAATATGGTCGGGCCAAGCTTCATGGAAGACATAGACTGCGGCAGCTTCTTCGATCACATTGATGACTTCCTCGACTTCCCCACTGAAGAAATCACCGTATCGTTGCCCTCTGATGCTGTCGGAAACTGTGACCCGTGGCCGGACATTTGGAACCCTGAGTCTGACTCATTACCTGGTTCAGACTCGGTCTTCTCTAACCACAGTGCCTCCGACCTCTCTACCGAACTCTCTGTGCCGTATGAAGACATTATTCAGTTGGAATGGATGTCCAAGTTTGTTGAGGATTCTTGCAATGATGCAAGTCTTACCATGAAGAAAGAAGAAATATCCTCTGATGTTGCCAATAAGGAATCAGGACAACAGCAGGATTTACAGACATGCAGCCCAGTGTCTGTTCTTGAAAGCAGCACCTCCTGCTCCGGGAAGAATCCTGCAGGTTGCAGCCCAGAAGTTCCGCTTCCAGGACGCTGCGGACGTGCACGCAGTAAGCGTTCTCGTCCTGCAACTTTCAGTCCCCGTCCGCCAATTCAGCTCATTTCCTCAGACTCCTCGATTAGTGAAACCAGGCAGCCATTTGTCTCTCTAAAAGCGTCTTCTGATTCAGAGAATGTTGCAGAGTCGTATTCTATGATCAAGCTCCAGAAACAAGTGTCTGCAGAGAATAAGAAGAAAAAGAAAATAAAACTCTCAGTCCCCTTGGCTCCTTTGGAAACAAACCAAAATTCACCATCACAAGCAGTGAGAAAATGCATGCATTGTGAGATAACCAAGACACCCCAATGGAGAGCAGGACCATTTGGACCGAAAACCCTATGCAATGCTTGCGGTGTCCGGTACAAGTCAGGCCGACTTTTCCCAGAATACCGTCCGGCAGCAAGTCCCACCTTTATCCCATCTATTCACTCCAATTCTCATAAGAAGGTTTTGGAGATGAGGAACATCAACAAGGAAAATACTCCTCTTGATTCAAATGGAACGGATTCAAGTGCTTTTCCAGAACTCATTCCCAATACCCATTGCGGCCTGACTCTTGATTCCATATGA 1191 0.4593 MNITWLQVFEVITREQGFQFCSLGSFGISKQNKLLLLSVLISPGNREGKNMVGPSFMEDIDCGSFFDHIDDFLDFPTEEITVSLPSDAVGNCDPWPDIWNPESDSLPGSDSVFSNHSASDLSTELSVPYEDIIQLEWMSKFVEDSCNDASLTMKKEEISSDVANKESGQQQDLQTCSPVSVLESSTSCSGKNPAGCSPEVPLPGRCGRARSKRSRPATFSPRPPIQLISSDSSISETRQPFVSLKASSDSENVAESYSMIKLQKQVSAENKKKKKIKLSVPLAPLETNQNSPSQAVRKCMHCEITKTPQWRAGPFGPKTLCNACGVRYKSGRLFPEYRPAASPTFIPSIHSNSHKKVLEMRNINKENTPLDSNGTDSSAFPELIPNTHCGLTLDSI* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00523 396 SMART GATA_3 293 343 IPR000679 GO:0006355|GO:0043565
Pte16g00523 396 ProSitePatterns GATA-type zinc finger domain. 299 324 IPR000679 GO:0006355|GO:0043565
Pte16g00523 396 Gene3D - 293 343 IPR013088 GO:0006355|GO:0008270
Pte16g00523 396 Pfam GATA zinc finger 299 332 IPR000679 GO:0006355|GO:0043565
Pte16g00523 396 ProSiteProfiles GATA-type zinc finger domain profile. 293 329 IPR000679 GO:0006355|GO:0043565
Pte16g00523 396 MobiDBLite consensus disorder prediction 184 228 - -
Pte16g00523 396 CDD ZnF_GATA 298 355 IPR000679 GO:0006355|GO:0043565
Pte16g00523 396 PANTHER GATA TRANSCRIPTION FACTOR 66 369 - -
Pte16g00523 396 FunFam GATA transcription factor 288 374 - -
Pte16g00523 396 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 297 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00523 Pte-Chr16 8929339 8963995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00523 99 367 C2C2-Gata Transcription Factor Family AT1G08010 35.806 4.08e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte16g00523 GATA 5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00523 - - qsa:O6P43_005032 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00523 16 8929339 8963995 Pte9g00571 9 8344073 8347691 RCT
Pte16g00523 16 8929339 8963995 Pte16g00523 16 8929339 8963995 RCT