Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00522 ATGGGAAGACAGCCTTGTTGTGATAAAGTTGGTTTGAAAAGAGGACCATGGACAATAGACGAAGATCACAAACTTGTCAACTTCATTCTCAACAATGGTATCACCTGCTGGCGTACGGTTCCTAAGCTTGCAGGATTATTGAGATGTGGGAAGAGCTGCAGATTGAGATGGATCAATTATTTGAGGCCAGATCTTAAGAGAGGTGGCTTCACAGAATCTGAGGAAAGCCAAATTATCCAGCTTCATGTACTTCTTGGGAATAGGTGGTCTAAAATTGCAGGGCATTTTCCTGGTAGGACAGACAATGAGATCAAAAACCATTGGAATACTAGAATCAAGAAGAAGTTAAAGCTGCTTGGCATAGACCCTGCGACACACAAGCCAGTTGAGAAAACGGAGGATGCTGATAGTAAAAGTGCGGTAAGACTGCAGCCAAGTACTGAATCAGAAGGACAAGAAGAAATCATGGAAAGTGTGCAGATACAATCCATTGACAGAAACGCCGAGAAACAACATCCTGCAACAGAAGACAATAGTACAAAAAGAGAAACCAGGAACTTGTCGGATGGTACTGTTGATAATCTCATTAGCTATTACGGGACGACATTATGTGGAAACTTGGATTTTGGAGTATGGGGGAACCAAAAGGCCAGTAATGCAAGCAATGGAAGCACAAGTTCCTATAATTCTTGTATTTCTTTAGATGAATATGCAAAACATGTTTGTGTTGCTGAATCGCCACAAATTCTGCAAGACTCTCTACAAGGATCAGCTGGATGGGTTGATAACATTGATTCCATGCTCTCATGGGATAGCCTCAATCACCTTGAGCAAGATCATTTCTTCTTCTAA 852 0.4155 MGRQPCCDKVGLKRGPWTIDEDHKLVNFILNNGITCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTESEESQIIQLHVLLGNRWSKIAGHFPGRTDNEIKNHWNTRIKKKLKLLGIDPATHKPVEKTEDADSKSAVRLQPSTESEGQEEIMESVQIQSIDRNAEKQHPATEDNSTKRETRNLSDGTVDNLISYYGTTLCGNLDFGVWGNQKASNASNGSTSSYNSCISLDEYAKHVCVAESPQILQDSLQGSAGWVDNIDSMLSWDSLNHLEQDHFFF* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00522 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte16g00522 283 FunFam MYB transcription factor 68 129 - -
Pte16g00522 283 CDD SANT 16 61 IPR001005 -
Pte16g00522 283 MobiDBLite consensus disorder prediction 139 168 - -
Pte16g00522 283 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte16g00522 283 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte16g00522 283 MobiDBLite consensus disorder prediction 123 138 - -
Pte16g00522 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte16g00522 283 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 207 - -
Pte16g00522 283 MobiDBLite consensus disorder prediction 169 186 - -
Pte16g00522 283 CDD SANT 70 110 IPR001005 -
Pte16g00522 283 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pte16g00522 283 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte16g00522 283 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte16g00522 283 SMART sant 13 63 IPR001005 -
Pte16g00522 283 SMART sant 66 114 IPR001005 -
Pte16g00522 283 Gene3D - 69 144 - -
Pte16g00522 283 Gene3D - 11 67 - -
Pte16g00522 283 MobiDBLite consensus disorder prediction 123 186 - -
Pte16g00522 283 FunFam MYB transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00522 Pte-Chr16 8874786 8875880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00522 1 169 MYB Transcription Factor Family AT1G66230 64.912 2.91e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte16g00522 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00522 K09422 - qsa:O6P43_008853 342.813