Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00509 ATGGATTCTATGAAGAGAAACTCAGGGAAAAGCATAGATTCTCAGTTATGGCATGCTTGTGCTGGTGGGTTGGTTCAGATTCCACCCATCAACTCCAAAGTCTTTTACTTTCCTCAAGGGCATGCAGAGCATGCTCATGAGAAAGTAGATTTTGAGAACTGTAGGTCTAGGGTTCCATATCTGATACCATGTAGGGTGTCTGCTATAAAATACATGGCAGACCCTCATACAGATGAGGTGTATGTTAAAGTGAGGATGACACCTCTGACTGACAGTGAAGGGATTGATGAGGATGAATTTCTTTTGGAGAACATTGGATTAGAGAGTCAAGAAAGACCTGAATCTTTTGCAAAGACATTGACACAGTCAGATGCGAACAATGGTGGAGGGTTTTCTGTGCCGCGTTATTGTGCGGAGACTATACTTCCAGTCTTGGACTACACAGCTGAGCCTCCAGTTCAAACCATTGTCGCAAAGGACATGCACGGACAGAACTGGAAATTTCGGCATATCTATAGAGGCACACCGCGTCGTCATCTTTTGACAACGGGATGGAGCAATTTTGTGAACCATAAGAAGCTTGTTGCTGGGGACTCCATAGTTTTTCTGAGGTCAAAGAATGGAGATCTCTGTGTTGGGATTAGGAGGGCTAGGAAAGGAATTGGTGGTGGAACTAAGTACTCATCTGGGTGGAATAATCAAGCAGGTGGAAACTGGGGCTCATTGTGTGAAGGGTATTCAGCTTTTCTGACTGAGGATGAGAGGATTTCATCAACAAGAAACTGCAGTGTGGGTTACAGGAGAAGGGTGACAGCTGAGTCAGTTGTTGAAGCTGTGGCACTTGCTGTCAATGGCAAGCCCTTCGAGATCGTGTACTATCCCAGTGCAGGCACCCCAGAGTTTTGGGTTAAGACCTCTACAGTGAGAGCTGCAATGCAAATCCAGTGGTGTTCTGGGATGAGATTTAAGATGCCGTTTGAAACTGAGGATTCTGCAAGAACCAGCTGGTTTATGGGGACTATCTCTGTTGTCAAGGAAGCTGATCCAATTTGTTGGCCGGGTTCTCCATGGCGTCTTCTAGAGGTGGAATGGGATGAGCCAGATTTGCTGATAAATGTTAGGCGAGTGAATCCATGGTTAGTTGAATTAGTGTCAAGCGATCCAGCATATCATCTCTTCCCCATTTCACAACCAAGAAAGAAATTTCGGGTTTCGCAGCATCAGGAAGTCACATATCTGGATCAAATGATGGGGCAACCATTTGCAGACAAAGTCATTACTAATCTCGGAAGCCCCTTTTGCAGTTTCTCAAATAACACAACTCCACGCATCCAGGGAGTCAGGCATGCTCAGTTTGGACCATCACTTTCTGAATTTAGGTTTACAGAACTGCAGTCAGATGTGGGTCCTCATGGATTTCCCCCACTTGATCATCATACTGTTCAACCTTGTAGACCTCAAGGTGGCACCTATCCTAGTAAGTTTTTGAAGGCAAAGAATGAAACAAAGGCAACACATATCTTTTTGTTTGGTCAGCTTATTCAAACTGAGCAGCAGAGTTGCTCTGATGATACATCTACAAACAGTTGTTCAGAGGGGAATTCAGACAAGACAACTAATTTGTCTGATGGTTCTGGTTCTACGTTGATCCAAAACGATTCCATGGCCAATTCTTCAGGGTCCCCCTGGTTCAGTGAGAACCCAAAATCTGGCCCTAACAAGGCGAGCTATGGTCATTGCAAGATTATCAATGCAAAAAGAGGAACTGAGTTGGACACAAAACTATCAATAGTTGGTTCACATGATCAGTTTCTTGGAGAACTGCAGAAGTGCTGA 1836 0.4461 MDSMKRNSGKSIDSQLWHACAGGLVQIPPINSKVFYFPQGHAEHAHEKVDFENCRSRVPYLIPCRVSAIKYMADPHTDEVYVKVRMTPLTDSEGIDEDEFLLENIGLESQERPESFAKTLTQSDANNGGGFSVPRYCAETILPVLDYTAEPPVQTIVAKDMHGQNWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRSKNGDLCVGIRRARKGIGGGTKYSSGWNNQAGGNWGSLCEGYSAFLTEDERISSTRNCSVGYRRRVTAESVVEAVALAVNGKPFEIVYYPSAGTPEFWVKTSTVRAAMQIQWCSGMRFKMPFETEDSARTSWFMGTISVVKEADPICWPGSPWRLLEVEWDEPDLLINVRRVNPWLVELVSSDPAYHLFPISQPRKKFRVSQHQEVTYLDQMMGQPFADKVITNLGSPFCSFSNNTTPRIQGVRHAQFGPSLSEFRFTELQSDVGPHGFPPLDHHTVQPCRPQGGTYPSKFLKAKNETKATHIFLFGQLIQTEQQSCSDDTSTNSCSEGNSDKTTNLSDGSGSTLIQNDSMANSSGSPWFSENPKSGPNKASYGHCKIINAKRGTELDTKLSIVGSHDQFLGELQKC* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00509 611 SMART B3_2 116 218 IPR003340 GO:0003677
Pte16g00509 611 MobiDBLite consensus disorder prediction 521 575 - -
Pte16g00509 611 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Pte16g00509 611 FunFam Auxin response factor 114 218 - -
Pte16g00509 611 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 550 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte16g00509 611 FunFam Auxin response factor 316 389 - -
Pte16g00509 611 Pfam B3 DNA binding domain 116 217 IPR003340 GO:0003677
Pte16g00509 611 SUPERFAMILY DNA-binding pseudobarrel domain 102 218 IPR015300 -
Pte16g00509 611 CDD B3_DNA 115 216 IPR003340 GO:0003677
Pte16g00509 611 Gene3D - 315 388 - -
Pte16g00509 611 Pfam Auxin response factor 278 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte16g00509 611 Gene3D - 114 217 IPR015300 -
Pte16g00509 611 MobiDBLite consensus disorder prediction 521 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00509 Pte-Chr16 8573215 8575309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00509 1 608 B3 DNA Binding Superfamily AT4G30080 51.757 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte16g00509 B3 1.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00509 - - qsa:O6P43_005033 718.768