Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00453 ATGGACCAGGAGAGCACAGAATCACAGGCGTCAACAACAAAGGCAAGAGGAAAGAAGACGGTGCTGCCATATCCAACACCAAAAGTCAGAGACCATTACCTTCTGGGCAAGAAGGTAGGACAAGGACAATTTGGTGTAACATATCAATGTACCCACAAAAAAACAGGCAATATTTTCGCCTGCAAGTCGATCCCAAAACGAAGGCTGTTGTGCAGGGAGGATTATGATGATGTGTGGAGGGAGATTCAGATCATGCATCACTTGTCTGAACACCGCAATGTGGTTAGGATCGAAGGGACATACGAGGATTCTTTGTTTGTTCACTTGGTTATGGAGCTTTGTGGTGGGGGCGAGCTGTTTGATAGAATTATCCGAAAGGGGCATTTCAGTGAGAAAGAGGCTGCCAGCTTGATCAAGGTTATTGTTGGGGTGTTGAGGCTTGTCATTCTCTTGGGGTCGTTCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATAGTCCTGATGATGATGCCAAGCTTAAAGCAACGGACTTTGGCTTGTCTGTGTTCCATAAGCCAGCTGAGACCTGTAGTTATGTCATCTGTACTTTCTGTTTCTGCAGGACAATACTTTCATGATGTAGTAGGAAGTCCCTACTATGTTGCTCCTGAAGTGTTGTTGAAGCAATATGGACGAGAAGTTGATGTATGGAGTGCTGGTGTTATCCTCTATATCTTGTTGAGTGGGGTTCCTCCTTTCTGGGCAGAAAGTGAAGCAGGAATTTTCGAACAGGTATTGCATGGAAAATTGGATTTTAAATCCGAACCATGGCCAAGTATCTCAGGAAGTGCCAAAGATTTGATAAACAAGATGCTTGAAAGGGATCCTAGGCAAAGGTTATCTGCCTATCAAGTCCTATGTCATCCTTGGATTCTGGATGACAGAGTTGCCCCTGACAAACCTCTTGATTCAGCAGTGTTGGCACGTTTAAAGCAGTTTTCAGCAATGAACAAACTTAAGAAGATGGCTCTGCGTGTAATTGCAGAGAGACTTTCGGAGGAAGAGATTGGTGGTTTGAAAGAGTTGTTCAAAATGATTGACACAGATAACAGCGGAACAATAACATTTGAAGAATTGAAAGTAGGCCTGAGAAAAGTGGGTTCAGATCTTATGGAATCTGAAATCAAGTCCCTTATGGAAGCAGCTGATATAGACAACAATGGATCAATAGACTACGGTGAATTTCTTGCTGCTACGTTGCACATGAATAAGATGGAGAGGGAGGAGAACCTACTTGCGGCCTTCTCCTATTTTGACAAAGACAGTAGTGGTTACATTACCATTGATGAACTTCAACTGGCCTTCAATGAATTTAATCTAGTTGATGTCCGAGTGGATGATATAATCAAAGAAGTTGATCAAGACAACGATGGACGAATAGATTATTCAGAATTTACAGCAATGATGAAGAAAGTGGATGGAGGAGTTGGTAGGAGCAGGAGCAGAAGGGGAAACTTGGGGTTCAATCTGGGGGATGCTCTTCTTGCAAGCAACTCCTCCTCAAACACAAAGTAA 1557 0.431 MDQESTESQASTTKARGKKTVLPYPTPKVRDHYLLGKKVGQGQFGVTYQCTHKKTGNIFACKSIPKRRLLCREDYDDVWREIQIMHHLSEHRNVVRIEGTYEDSLFVHLVMELCGGGELFDRIIRKGHFSEKEAASLIKVIVGVLRLVILLGSFIGISSLRISCLIVLMMMPSLKQRTLACLCSISQLRPVVMSSVLSVSAGQYFHDVVGSPYYVAPEVLLKQYGREVDVWSAGVILYILLSGVPPFWAESEAGIFEQVLHGKLDFKSEPWPSISGSAKDLINKMLERDPRQRLSAYQVLCHPWILDDRVAPDKPLDSAVLARLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKVGLRKVGSDLMESEIKSLMEAADIDNNGSIDYGEFLAATLHMNKMEREENLLAAFSYFDKDSSGYITIDELQLAFNEFNLVDVRVDDIIKEVDQDNDGRIDYSEFTAMMKKVDGGVGRSRSRRGNLGFNLGDALLASNSSSNTK* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00453 518 ProSitePatterns EF-hand calcium-binding domain. 467 479 IPR018247 -
Pte16g00453 518 ProSiteProfiles Protein kinase domain profile. 33 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte16g00453 518 ProSiteProfiles EF-hand calcium-binding domain profile. 420 452 IPR002048 GO:0005509
Pte16g00453 518 CDD EFh 353 412 IPR002048 GO:0005509
Pte16g00453 518 SUPERFAMILY EF-hand 329 486 IPR011992 -
Pte16g00453 518 CDD EFh 425 484 IPR002048 GO:0005509
Pte16g00453 518 Gene3D Phosphorylase Kinase; domain 1 37 113 - -
Pte16g00453 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 479 - -
Pte16g00453 518 FunFam Calcium-dependent protein kinase SK5 215 310 - -
Pte16g00453 518 SUPERFAMILY Protein kinase-like (PK-like) 28 328 IPR011009 -
Pte16g00453 518 FunFam Calcium-dependent protein kinase 1 313 487 - -
Pte16g00453 518 CDD STKc_CAMK 32 304 - -
Pte16g00453 518 Gene3D - 312 488 - -
Pte16g00453 518 SMART efh_1 352 380 IPR002048 GO:0005509
Pte16g00453 518 SMART efh_1 424 452 IPR002048 GO:0005509
Pte16g00453 518 SMART efh_1 458 486 IPR002048 GO:0005509
Pte16g00453 518 SMART efh_1 388 416 IPR002048 GO:0005509
Pte16g00453 518 ProSitePatterns Protein kinases ATP-binding region signature. 39 62 IPR017441 GO:0005524
Pte16g00453 518 MobiDBLite consensus disorder prediction 1 22 - -
Pte16g00453 518 ProSitePatterns EF-hand calcium-binding domain. 397 409 IPR018247 -
Pte16g00453 518 Gene3D Transferase(Phosphotransferase) domain 1 73 145 - -
Pte16g00453 518 ProSiteProfiles EF-hand calcium-binding domain profile. 454 489 IPR002048 GO:0005509
Pte16g00453 518 ProSitePatterns EF-hand calcium-binding domain. 361 373 IPR018247 -
Pte16g00453 518 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
Pte16g00453 518 FunFam Calcium-dependent protein kinase 1 35 118 - -
Pte16g00453 518 MobiDBLite consensus disorder prediction 1 16 - -
Pte16g00453 518 ProSiteProfiles EF-hand calcium-binding domain profile. 348 383 IPR002048 GO:0005509
Pte16g00453 518 Pfam Protein kinase domain 202 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte16g00453 518 Pfam Protein kinase domain 35 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte16g00453 518 Gene3D Transferase(Phosphotransferase) domain 1 186 310 - -
Pte16g00453 518 Pfam EF-hand domain pair 423 484 IPR002048 GO:0005509
Pte16g00453 518 Pfam EF-hand domain pair 353 413 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00453 Pte-Chr16 6807251 6810035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00453 16 516 EF-hand Containing Proteins AT1G35670 69.384 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pte16g00453 Pkinase 1.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00453 K13412 - tcc:18592952 714.146