Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00451 ATGAAGACTCTCGTCTTTGGTACTCTCTTCGTTGCTTTCAACATTATCTCTGCAACATTTGTTGCTTCACATGACACCATGAATAAAAACTACAACACTGTCACCTTCCTCACAAAATACTTAGAGGAATCAAGGTCCCGAGTTCAAAAAGTCATGGAGATGGCTGATGCTCTAAAACTGTACCTTGTTAAGCAACCTGGAGAACAAACGGGTTTGCAAGTTTGTCTCCAGTTTATGGACATGTCGATGGATTGGATTGAGGGTTCCCTTGAAGCTCTTTCAAAGTACAACATTCATTCCTACCATGACGCACATACATGGTTAAGCAGTGTTCTCACTCATCATATCACATGCTTGGATAGCCTTCGATGGTTAGCTAGAATCTTGTTGAAGAGTTATCTTAATGACCTAATAATAAGAGACAAGACCTCCCTTGACATATTTGTTGCAATAGATAAGCCCGTGATTGATGAGACATCAAATGAAGATTTGCCAATGTGGATGACATGGGAGGATCATAAGCTCTTGCACTCTTCGATAAACGATGTCAATGTCAACGTTGTGGTGGCTAAAGATGGAAGTGGCGACTACAAGACATTGGGAGAGGCCGTGGAAGCTGCACCTGATAATATCAAATCAAGATACATCATATATGTCAAGGCAGGCACGTATCATGAAAATATTGTTATTGGGAAGACGAAGACTAATTTGATGATCAGGGGTCAGAGTATGAACTCAACTATAATTACTGGAAGTTTGAATGCTCTTGAGGGACAGGACATTCAGCACAGTGCTACTCTCAGTGTCGACGCTTATGGATTCATAGCGTCACGCATCTGCATCCGGAATACAGCAGGACCAAAGAAATGGCAAGCGGTGGCGCTTCGCATCGCCGGCGATAAAGCCGCCATCTCACAATGTAAAATAGATGGGTATCAAGACACACTCTTTGCTTTCACTAATCGCCAGTTCTATACTGAGTCCATAATTACCGGCACAGTTGACTTCATATTTGGAAATTCACAAACGATGATTCAAAACTGTAGCATTGTAGCCAAAAGGCCCTTGTATGGTCAAAATAATATGATCACTGCTCAAGGCCGACTTCATCCAAATCAAAACACTGCCATTTCTATTCAGTTCTGCAGAATCATCCCAGATGCATCACTTGTGCCGATGAAGAGCAAGATTGCTACATACCTAGGGCGTCCCTGGAAGATCTACTCAAGAACTATGGTCATGCAGAGTTTCATCGGAAACCATGTTGATCCAGCTGGTTGGGCACCATGGGAAGACACAGGTGGTGACCTTACACATTTGTACTATGCTGAGTTTGAAAATAACGGTCCAGGTGCAGACACTAGTTACAGAGTGAATTGGTCTAGCTATCACATAATATCTGACAAGGCTGAAGCCATTCCATTTACAGTAGCAAGACTTATTGATGGGAATACTTGGTTGAAGAGAGATGGAGTGCCCTATACATCTGGGCTATCTCGCTGA 1503 0.4265 MKTLVFGTLFVAFNIISATFVASHDTMNKNYNTVTFLTKYLEESRSRVQKVMEMADALKLYLVKQPGEQTGLQVCLQFMDMSMDWIEGSLEALSKYNIHSYHDAHTWLSSVLTHHITCLDSLRWLARILLKSYLNDLIIRDKTSLDIFVAIDKPVIDETSNEDLPMWMTWEDHKLLHSSINDVNVNVVVAKDGSGDYKTLGEAVEAAPDNIKSRYIIYVKAGTYHENIVIGKTKTNLMIRGQSMNSTIITGSLNALEGQDIQHSATLSVDAYGFIASRICIRNTAGPKKWQAVALRIAGDKAAISQCKIDGYQDTLFAFTNRQFYTESIITGTVDFIFGNSQTMIQNCSIVAKRPLYGQNNMITAQGRLHPNQNTAISIQFCRIIPDASLVPMKSKIATYLGRPWKIYSRTMVMQSFIGNHVDPAGWAPWEDTGGDLTHLYYAEFENNGPGADTSYRVNWSSYHIISDKAEAIPFTVARLIDGNTWLKRDGVPYTSGLSR* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00451 500 ProSitePatterns Pectinesterase signature 2. 330 339 IPR033131 -
Pte16g00451 500 FunFam Pectinesterase 180 498 - -
Pte16g00451 500 Pfam Pectinesterase 186 484 IPR000070 GO:0030599|GO:0042545
Pte16g00451 500 Pfam Plant invertase/pectin methylesterase inhibitor 44 122 IPR006501 GO:0004857
Pte16g00451 500 Gene3D - 180 498 IPR012334 -
Pte16g00451 500 SMART PMEI_2 16 151 IPR006501 GO:0004857
Pte16g00451 500 PANTHER PECTINESTERASE 35 488 - -
Pte16g00451 500 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 137 IPR035513 -
Pte16g00451 500 SUPERFAMILY Pectin lyase-like 184 497 IPR011050 -
Pte16g00451 500 Gene3D Invertase/pectin methylesterase inhibitor family protein 18 146 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00451 Pte-Chr16 6770179 6772511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00451 32 494 Carbohydrate Esterase AT1G11580 49.684 6.43e-157 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00451 K01051 - qsa:O6P43_031215 496.123