Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00449 ATGGATTCGGAATCATCTGTACCCCCAGGATTTCGATTTCACCCAACAGAGGAAGAACTTGTTGGATACTATCTGAAGAGGAAGATAAACTATATGAAGATTGATTTAGATGTTATTGTGGAAGTTGATCTCTACAAAATTGAACCATGGGATATACAAGATAGATGCAAGCTAGGGTATGATGAACAGAATGAGTGGTACTTCTTCAGTCACAAAGACAAAAAGTATCCAACAGGAACTCGAACTAACAGAGCCACTGTTGCTGGGTTCTGGAAGGCAACTGGGAGGGACAAGGCTGTGATATCAAAAGACAGGATCATAGGGATGAGAAAGACATTGGTCTTCTACAAAGGACGTGCCCCTAATGGCAGGAAAACTGACTGGATAATGCATGAGTACAGGCTGCAGACCTCAGAACATGCACCTCCTCAGGAAGAAGGATGGGTGGTGTGCAGGGCATTCAGAAAGCCAACTCCAAGTCAAAGGCCAGGCCTTGAAGCTTGGAATCAAGCATTTCTTAGATACCAGAACTATGCAAGGCCTCCATCATTTTCACCTTCAGATAATGTTATGGTAAATGAATCAACACTGTCAACACATCTGATTCATCCAACTGATCATGCTGCTTGTTTCCGACAGCAGTTTATGTCAGAAGAACAAATACAACTTGTTCAAGACCATGTAGCTCTGGACAGCAAACACATTGAGCTGCCACCACTGGACAGTCCTAACACCCCCACAATCTCCACAAGTTTGGTTACTGAAGATAATTACAATGATGGAAAGAGCAATAATATTAATGACAGTGGCTATCTTTGCCTTGATTGGAAAAACTTGGACAACTTACTTGCCTCACAAGTGACAGATTCAACTTACTATCAGCCCAGTACCTCTAAGGCCAGCATGATACCCCATAATCATGAAATGCAAGCACAAAGTCATAATAGTAGTGTACTTGGATACTATCCTACTGACTCATAA 981 0.421 MDSESSVPPGFRFHPTEEELVGYYLKRKINYMKIDLDVIVEVDLYKIEPWDIQDRCKLGYDEQNEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKAVISKDRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRLQTSEHAPPQEEGWVVCRAFRKPTPSQRPGLEAWNQAFLRYQNYARPPSFSPSDNVMVNESTLSTHLIHPTDHAACFRQQFMSEEQIQLVQDHVALDSKHIELPPLDSPNTPTISTSLVTEDNYNDGKSNNINDSGYLCLDWKNLDNLLASQVTDSTYYQPSTSKASMIPHNHEMQAQSHNSSVLGYYPTDS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00449 326 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 244 - -
Pte16g00449 326 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Pte16g00449 326 FunFam NAC domain-containing protein 16 160 - -
Pte16g00449 326 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Pte16g00449 326 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Pte16g00449 326 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00449 Pte-Chr16 6752778 6756264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00449 4 323 NAC Transcription Factor Family AT1G71930 55.723 7.61e-118 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte16g00449 NAM 3.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00449 - - tcc:18592949 412.92