Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00435 ATGGATAAGGAGAGCCTATGTGCTAATAATTGGGGGAGGCCTTCTTCCTCCTCTTCTGCAAATGGTTCTCAGGCAAACTTATCCATGGATCCTCCTCTATTTCAAAATTTCAGTATGCAGAGCATTCTTCCTAAGTGGGAAAGTATATCTAACTCAAACTATGTCATCAATATAGAAGCACCTTTCCAAGAGTTCAATCAATCTACTGGACCTCATTCCGCTGTAACCTGCGGCCCTAAGTACCAGATGGAAATCCAAGACGAAGAAAATGGTGTGATGAGAGACGCACTGCAAAGTAACAAGATTCAAGATTGGGATCCAAGAGCAATGTTGAGTAACCTGTCTTTTCTGGAGGACAAGATTCATCAATTACAAGATCTTGTGCATTTGATTGATGGTCAGGAAGGACAAGTTCATGGAGGACCAGATGAACTTGTAACTCAGCAACAGCAGCTAATCACTGCTGATCTTACATCAATCATTGCTCAGTTAATCTCAACTGCTGGCAGTCTGCTTCCATCTGTCAAGCAATCTCTTGCTGCTGATGCATCCGTTGCACAACTCGAAGGAGTTACATTTCCTCCTGAAGGCATCAATAGCAGTGTTCAGCTTCCAAAAATTGCTGGAAAGCAAGTTGTTGATCAATCTCATCAAGTTGATCAAACTGCTAAGTGCAGGACAGAACGAAACCATATTGAGGAACACGAAATGAAAGATGATGAAGAGATGGATGATGGAGAAAACCTTCCACCTGGTTCGTACGAAATATTGCAGCTGGAGAAAGAAGAAATTCTTGCACCTCATACTCACTTCTGCACTATATGTGGTAAAGGTTTTAAACGTGATGCTAACCTAAGAATGCACATGAGAGGTCATGGAGATGAGTACAAAACCCCAGCTGCACTTGCTAAGCCTCATAAAGATTCTAGCTCTGAATCTGCTCTTCTTAAGAGGTATTCTTGCCCCTTTGTTGGCTGCAAGCGTAACAAGGAGCACAAGAAGTTTCAGCCATTGAAGACGATTTTATGTGTTAAAAACCATTACAAGAGAACTCATTGTGACAAAAGTCATACTTGCAGCAGATGCCACACCAAGAAGTTTTCGGTCATGGCGGATCTTAAGACTCATGAAAAGCATTGCGGTAAGGATAAGTGGCTTTGTTCGTGTGGTACTACATTCTCAAGGAAGGACAAGCTTTTTGGACACGTTGCTTTGTTCCAAGGGCATACACCAGCCATTCCCTTGGATGAAAACAAAGCGACAGCCTTGCCACCAGAAAGAGAGGATTGCAAAGAAGCAATAGAAAAGGCTGGAAGTATGAACTTCAGTTTTGGATCACCATCTGCTGGAGATGGAGCTCAGGGCATCGTGATTGCTGACGATGCTAGCAGCAATTTATTCACGTCATTGAATTTCGATACCAGCATTATTGGTGGATTTCCTGAGTTCCCTCGACTCCCATTTGACGACACAGAGAACTCATTCTCATTTCTTTTTCCGGGATCTTTTGATTATAGACGAAAATCTGGAGGTGAATTGAGTTCCAACAATCTTGAATGA 1560 0.4244 MDKESLCANNWGRPSSSSSANGSQANLSMDPPLFQNFSMQSILPKWESISNSNYVINIEAPFQEFNQSTGPHSAVTCGPKYQMEIQDEENGVMRDALQSNKIQDWDPRAMLSNLSFLEDKIHQLQDLVHLIDGQEGQVHGGPDELVTQQQQLITADLTSIIAQLISTAGSLLPSVKQSLAADASVAQLEGVTFPPEGINSSVQLPKIAGKQVVDQSHQVDQTAKCRTERNHIEEHEMKDDEEMDDGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKDSSSESALLKRYSCPFVGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSHTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHVALFQGHTPAIPLDENKATALPPEREDCKEAIEKAGSMNFSFGSPSAGDGAQGIVIADDASSNLFTSLNFDTSIIGGFPEFPRLPFDDTENSFSFLFPGSFDYRRKSGGELSSNNLE* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00435 519 SMART c2h2final6 270 292 IPR013087 -
Pte16g00435 519 SMART c2h2final6 357 379 IPR013087 -
Pte16g00435 519 SMART c2h2final6 319 352 IPR013087 -
Pte16g00435 519 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 91 432 IPR044300 GO:0010044|GO:0010447
Pte16g00435 519 SUPERFAMILY beta-beta-alpha zinc fingers 268 295 IPR036236 -
Pte16g00435 519 ProSitePatterns Zinc finger C2H2 type domain signature. 272 292 IPR013087 -
Pte16g00435 519 Gene3D Classic Zinc Finger 254 324 - -
Pte16g00435 519 MobiDBLite consensus disorder prediction 1 27 - -
Pte16g00435 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 297 IPR013087 -
Pte16g00435 519 MobiDBLite consensus disorder prediction 9 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00435 Pte-Chr16 6265136 6266695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00435 237 516 C2H2 Transcription Factor Family AT1G34370 67.832 1.83e-136 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte16g00435 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00435 - - qsa:O6P43_004100 673.7