Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00433 ATGGGAGATCCAGACGAAGAGGAGCTTTTGAAACTCAGCCTTGCAACTGGCGATAAGAAGAAGAAAAGAAAGGAGAGTACTGCTGCTTTATGCCCTTCGAATTTCTATGAGGGTTTTGAAGGAAACATATTTAATCTCTTTCAACTAAGGGAACAGATGCGAAGACAAGATTGCAAGAGCAAAGAAGTGGTTGATTGTGCACATGGTCAGAAGCTCATGCATTTATTGCTCACAACTGCCTCCGCAATTGATGAAAACAATGTATACGCTGCCATGGAGTATCTGAGTGAGCTCTACCAAAGTGTAACATTAACTGGTGACTCAGTACAAAGAGTGGTGGCTTATTTCACAGATGGATTGGCTGCAAGGCTTCTCACCCCAAGATCTCAATTTTATGATGTGCTCATGAAGGAACCAACAAGTGAAGAAGAATTCAAAGCATTCACGAACTTCTACCGTGTATCACCATACTACCAGTTTGCTCACTTCACAGCAAATCAAGCTATAATAGAGGCGTTTGAGAATGAGGAGGAAATTAACAACCGGGTATTACATGTAATTGACTTTGATGTTTCTTATGGTTTCCAATGGCCTTCTTTGATTCAGTCACTTTCTGAAAAGGCATCAACTAGTAATTGCATTTATCTCCGAATAACTGGATTTGGAAGAAACTTGGAAGAGCTACAAGATACAGAAGCCAGATTAGTTAGCTTCTCAAAGGGTTTTGATAATTTGATATTTGAATTTCAAGGTTTGCTGAGAGGGAAATCATCTCCTGTTAACCTAAGGAGAAAAGGGAATGAGACATTAGCAGTGAACTTGGTTTTCCATTTGATTACTTTGAATAAGTGTTTTACTATTTCAGAGACATTTAAATTCATGCGCTCACTGAATCCCTCAATTGTTGTGTTGGTTAAACAAGATTGCAGTGGAATTCCTACAAGCTTCTTATCAAGGTTCATGGAGTCTTTGCATTATTTTGAAGCTATGTTTGATTCATTGGATGATTGCCTTCCACTTGAAAGCACTGAAAGATTGGGTATTGAGAATAATCTTTTAGGGAAAGAAATCAAATGCCTGCTCAACTATGACATGGATTGTCTAAGTTGGTCGGGATATGACATGATAGAAACATGGAAACCAAACATGGAAAGCCATGGATTTGCAGCAGTTAAGATAAGCTCAAAGGCTATAATTCAAGCAAAACTCCTTCTAAAGATTAGAACTCACTACTGTCCTCTTCAATTTGATGGAGAAGGTGGCGGTAATGGTGGGTTTAGGGTTTCTGAAGGAGATGAGGGAACAGCTATTTCATTGGCTTGGCAAGACAGGTTACTACTGAAAGCTTGTGCATGGCACTGCCTATGA 1368 0.3933 MGDPDEEELLKLSLATGDKKKKRKESTAALCPSNFYEGFEGNIFNLFQLREQMRRQDCKSKEVVDCAHGQKLMHLLLTTASAIDENNVYAAMEYLSELYQSVTLTGDSVQRVVAYFTDGLAARLLTPRSQFYDVLMKEPTSEEEFKAFTNFYRVSPYYQFAHFTANQAIIEAFENEEEINNRVLHVIDFDVSYGFQWPSLIQSLSEKASTSNCIYLRITGFGRNLEELQDTEARLVSFSKGFDNLIFEFQGLLRGKSSPVNLRRKGNETLAVNLVFHLITLNKCFTISETFKFMRSLNPSIVVLVKQDCSGIPTSFLSRFMESLHYFEAMFDSLDDCLPLESTERLGIENNLLGKEIKCLLNYDMDCLSWSGYDMIETWKPNMESHGFAAVKISSKAIIQAKLLLKIRTHYCPLQFDGEGGGNGGFRVSEGDEGTAISLAWQDRLLLKACAWHCL* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00433 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 62 446 IPR005202 -
Pte16g00433 455 ProSiteProfiles GRAS family profile. 63 453 IPR005202 -
Pte16g00433 455 Pfam GRAS domain family 72 452 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00433 Pte-Chr16 6254024 6255391 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00433 80 452 GRAS Transcription Factor Family AT3G54220 34.646 2.78e-53 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte16g00433 GRAS 1e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00433 - - pop:18104478 586.26