Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00418 ATGGGTCGCTCCCGTAAGGCGCTCCTTCCGATTCTTCATGAAGAAGACCCCAGCCAAAGATCCAAGAGAAAAAGGAATGGTTCTAATACAGAGATTCCAAAAGCTGGATTTGTAGGTGATTGCTTATCAACTGATCAAGTGGCAATTAGAGAGAAAGTTGCTCAGTACCACTGTAATTATTGCAATAAAGATATTTCAGGAAAGATCCGCATCAAGTGTGTTGTATGCCAAGATTTTGACCTTTGCATGGAATGCTTCTCTGTCGGAGCTGAAATTACTCACCACAAGTGCAATCATCCATATAGGGTTATGGATAATTTATCCATTCCACTTATATGCCCAGGATGGAATGCAGATGAAGAGATGTTACTTTTAGAGGGCATTGAAATATATGGATTTGGGAATTGGACTGAAGTTGCAGAACATGTTGGAACAAAGAGCAAAGCTCAGTGCATTGACCATTACAATACTTTTTATATGAACTCACCTTGCTTCCCACTTCCGGATTTGTCTCATATCATGGGAAAAAGCAGAGAGGAGCTAGCTGCTATGTATAAAGAGTGTGAAGAGACCAACAAAGAATTTCATCCACCTGTGGAAGTGAAAGAAGAGCCTCCATTGTGTGCTGGGATCAACTATCAAGTACCTAAAAAGGAAGAAGAAACTTCTCACTTCCCATCTAGTGATGGTTATGGTTCCAATAGTAATAAAACATTCTCAAGTACAACTAAGAAGGCTTCAGATATGGGCCAGCCTAAGGATGAAATCAACCCAGAAAAATATATATCAGATCGTAGCATAGGAGAGAAGAAACCCAAGATCTCTGGGGAAGATGGACCTACTGTAACTGAGTTGTGTGGTTACAATTTTAACAGGCAGGAGTTTGAGATTGAGTATGACAATGATGCTGAACAAGTATTAGCAGACATGGAATTTAAAGATGCTGATACTCCGGCTGAACGTGAAATAAAACTGCGAGTATTGCGTGTTTATTCGAGACGGCTAGATGAGCGGAAACGCAGAAAGGAGTTTATACTTGAGAGAGATTTACTATATCCTGACAGTTTGGAAAATTTTCTTTCGCCCGAAGAGAGAGAAATATGTAAATGCTACAGGGTCTTTGCACGATTCCACTCAAAAGAAGAACATGAGGAACTTCTCAGAAGTATTGTAGAGGAACACCGAATGGTTAAAAGAATTAAAGAACTTCAGGAAGCTCGAGTTGCTGGCTGTCGAACATCTATTGAGGCTAGGAGATATATTTACCAAATGAGGATGAAGGAAGTTGAACAAACACTACAAAAAGTAAATGGTCAAGGTTCGAATGGAAAAGCCTTGGACAGGCCTGACGTTGTAAAAGTAGAATCTGATGTCTGTGTTGGAGGGGATCATATAGTAACTGCTGGCGGCTTCGATTCATTTGCATCAAGGCCTAGTTTCTCCAGGTCCCTAGATTGGGATATAACTGGTTTTCCAGGCTCCGAGTTATTATCCGAAACTGAGAAAAAACTTTGCAGTGATATCCGAGTATTACCTGCACACTATCTCAACATGTTGCAAGTCATTTCTGTGGAAATATCAAAGGGAACCGTTACCAAGAAGGCTGATGCACATAGCCTGTTCAAGGTAGAAGGGAGCAAAGTTGATAAGGTTTATGATATGCTAGTTGCGAAGGGCATTGCTCAAGCATGA 1692 0.4072 MGRSRKALLPILHEEDPSQRSKRKRNGSNTEIPKAGFVGDCLSTDQVAIREKVAQYHCNYCNKDISGKIRIKCVVCQDFDLCMECFSVGAEITHHKCNHPYRVMDNLSIPLICPGWNADEEMLLLEGIEIYGFGNWTEVAEHVGTKSKAQCIDHYNTFYMNSPCFPLPDLSHIMGKSREELAAMYKECEETNKEFHPPVEVKEEPPLCAGINYQVPKKEEETSHFPSSDGYGSNSNKTFSSTTKKASDMGQPKDEINPEKYISDRSIGEKKPKISGEDGPTVTELCGYNFNRQEFEIEYDNDAEQVLADMEFKDADTPAEREIKLRVLRVYSRRLDERKRRKEFILERDLLYPDSLENFLSPEEREICKCYRVFARFHSKEEHEELLRSIVEEHRMVKRIKELQEARVAGCRTSIEARRYIYQMRMKEVEQTLQKVNGQGSNGKALDRPDVVKVESDVCVGGDHIVTAGGFDSFASRPSFSRSLDWDITGFPGSELLSETEKKLCSDIRVLPAHYLNMLQVISVEISKGTVTKKADAHSLFKVEGSKVDKVYDMLVAKGIAQA* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00418 563 ProSiteProfiles Myb-like domain profile. 116 159 IPR001005 -
Pte16g00418 563 MobiDBLite consensus disorder prediction 226 247 - -
Pte16g00418 563 CDD SANT 116 158 IPR001005 -
Pte16g00418 563 ProSiteProfiles Zinc finger ZZ-type profile. 53 109 IPR000433 GO:0008270
Pte16g00418 563 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 163 IPR017930 -
Pte16g00418 563 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 55 558 - -
Pte16g00418 563 SUPERFAMILY Homeodomain-like 109 162 IPR009057 -
Pte16g00418 563 SUPERFAMILY Homeodomain-like 483 560 IPR009057 -
Pte16g00418 563 ProSiteProfiles SWIRM domain profile. 477 563 IPR007526 GO:0005515
Pte16g00418 563 SMART zz_5 52 96 IPR000433 GO:0008270
Pte16g00418 563 CDD ZZ_ADA2 56 104 IPR041983 -
Pte16g00418 563 Pfam Zinc finger, ZZ type 55 88 IPR000433 GO:0008270
Pte16g00418 563 MobiDBLite consensus disorder prediction 9 31 - -
Pte16g00418 563 MobiDBLite consensus disorder prediction 248 277 - -
Pte16g00418 563 MobiDBLite consensus disorder prediction 218 278 - -
Pte16g00418 563 Coils Coil 174 194 - -
Pte16g00418 563 ProSitePatterns Zinc finger ZZ-type signature. 58 85 IPR000433 GO:0008270
Pte16g00418 563 SUPERFAMILY RING/U-box 52 119 - -
Pte16g00418 563 Gene3D - 115 163 - -
Pte16g00418 563 Gene3D - 48 102 IPR043145 -
Pte16g00418 563 FunFam Transcriptional adapter 50 104 - -
Pte16g00418 563 MobiDBLite consensus disorder prediction 9 29 - -
Pte16g00418 563 PIRSF Txn_adaptor_ADA2 44 563 IPR016827 GO:0003713|GO:0006357|GO:0035065
Pte16g00418 563 FunFam Transcriptional adapter 2 481 562 - -
Pte16g00418 563 Pfam Myb-like DNA-binding domain 116 157 IPR001005 -
Pte16g00418 563 SMART sant 112 161 IPR001005 -
Pte16g00418 563 Gene3D - 481 562 IPR036388 -
Pte16g00418 563 ProSiteProfiles SANT domain profile. 111 163 IPR017884 -
Pte16g00418 563 FunFam Transcriptional adapter 2 109 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00418 Pte-Chr16 5934082 5941694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00418 1 563 EF-hand Containing Proteins AT3G07740 51.119 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte16g00418 Myb_DNA-binding 6.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00418 K11314 - jre:109002857 682.174