Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00410 ATGGCATCTTCACAACACCGTTGCGTTTTTGTTGGGAACATACCGTATGATGCTACAGAGGAACAACTTATTGAAATTTGCCAGGAGGTTGGCCCTGTTGTCTCATTCAGATTAGTTATAGATAGAGAAACTGGGAAACCAAAAGGCTATGGATTCTGTGAGTACAAGGATGAAGAAACAGCTTTAAGTGCACGTCGCAACCTCCAGGGCTATGAGATCAATGGCCGGCAACTACGTGTTGATTTTGCTGAAAATGACAAAAATGCTGACAGAAATAGAGAACAGGGTCGTGGTGGACCAGGACTGGCTGCAAGTGTTGATCCTCGAAGACAATTAGGCATGCCTATAAACCAAGGGGATTTCATTAACCATCAGCCCATTGGAGTGCATGTTGCTATAACAGCCTCCATGTCCATGGCAGGAGCTCTAGGTGGAGGTCACACGGGTGCCCACTCTAATCAAAGTGGTTTACAAAATCAGTCTATAGTGGCTCATGATCCTTTGACTTTTCATCTGGCCAAAATGTCCAGAACTCAGCTGACTGAAGTTATGTCTGAGTTGAAGATGCTGGCCACAAAAGACAAGGAACTAGCTCGCCAGCTATTGCTTTCAAGGCCACAATTATCAAAAGCTCTCTTTCAGGCGCAGATAATGCTGAACATGGTGACCCCACAAGTGCTTCAAATGCCAAATCTGCAGCAGCCCCCAGGTCAGTTCTCCCAAGGTCAAGCAGCAGTTCAAGCTACACTGGGGCTACCCCCTTCTGCACCGAACAAGTCACCATCTGGGATGGTACCAAAATTGCAAGAAGATCAAGGCTATAATGTAGCTCAGAATCCACTGGTGCCAAAACAATTTGCTGCCCCCGTTAGGCCTCTCATACAACCTCAACTACCAGTACAATTTTCAGACAATCATGTCCTGCCGCTGGGCACACGTGTGGGACAATCTAATTCTTTACCACTGAGCCAGCAAAATCCTTTACCACAGGCTGGAACTTCAAGTTCACACAGAGTTCGTGCAAACACTATCGGACATTCTTCAGTCCTACCACATCCACCATTGTTGGATGCAATCATCCAGCAGCCTGGCCCCTCAACGTCGTCATCAGGAACTCCTCGTCTTGTCAATGAGGAAGGGCCTAGACCTTATGAAGTCCTTGAGAATTCAAATTGGGTTCAGAGAAGTAGCATGTCCTTGAAAAATAAAGGCAAGAATCTGGTTACTGATTCATCAGACCCAAATAACCGCCCTTCAAAGCTAATGAAGTTAGATGATGGTGGGCATGCCTATTCAGGAGGAGCTCCTAGAGTAACTGCCAATAACGGATCATCTCAAGTTTTTGATTCTGGCGCATTGCCTGTTAATGTAGCTCTTAGTGCAGAAGTGCAACACTTCCAGCAGCAATCTTCTCAGGTAACTATTGACCACTTTTATTGA 1440 0.459 MASSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKNADRNREQGRGGPGLAASVDPRRQLGMPINQGDFINHQPIGVHVAITASMSMAGALGGGHTGAHSNQSGLQNQSIVAHDPLTFHLAKMSRTQLTEVMSELKMLATKDKELARQLLLSRPQLSKALFQAQIMLNMVTPQVLQMPNLQQPPGQFSQGQAAVQATLGLPPSAPNKSPSGMVPKLQEDQGYNVAQNPLVPKQFAAPVRPLIQPQLPVQFSDNHVLPLGTRVGQSNSLPLSQQNPLPQAGTSSSHRVRANTIGHSSVLPHPPLLDAIIQQPGPSTSSSGTPRLVNEEGPRPYEVLENSNWVQRSSMSLKNKGKNLVTDSSDPNNRPSKLMKLDDGGHAYSGGAPRVTANNGSSQVFDSGALPVNVALSAEVQHFQQQSSQVTIDHFY* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00410 479 SUPERFAMILY RNA-binding domain, RBD 4 102 IPR035979 GO:0003676
Pte16g00410 479 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 426 - -
Pte16g00410 479 Gene3D - 1 113 IPR012677 -
Pte16g00410 479 MobiDBLite consensus disorder prediction 400 419 - -
Pte16g00410 479 MobiDBLite consensus disorder prediction 312 343 - -
Pte16g00410 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Pte16g00410 479 SMART rrm1_1 8 81 IPR000504 GO:0003723
Pte16g00410 479 FunFam Cleavage stimulating factor 64 155 230 - -
Pte16g00410 479 MobiDBLite consensus disorder prediction 400 418 - -
Pte16g00410 479 MobiDBLite consensus disorder prediction 361 375 - -
Pte16g00410 479 MobiDBLite consensus disorder prediction 89 109 - -
Pte16g00410 479 Pfam Hinge domain of cleavage stimulation factor subunit 2 159 228 IPR025742 -
Pte16g00410 479 MobiDBLite consensus disorder prediction 312 379 - -
Pte16g00410 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Pte16g00410 479 FunFam Cleavage stimulating factor 64 1 116 - -
Pte16g00410 479 Gene3D - 157 230 - -
Pte16g00410 479 CDD RRM_CSTF2_RNA15_like 7 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00410 Pte-Chr16 5773418 5781273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00410 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.31e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00410 K14407 - qsu:112034134 492.271