Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00409 ATGACGGTTGCTTCTGATACTTCTCCTGGTTCTGCGGGGAAGGGGAACGTTAAGGCTTGGCCTCCTGGGTTTCGGTTCCATCCTACTGATGAAGAGTTAGTTTTGTACTATCTGAAGAGGAAGATTTGCAGGAAGAGACTACGGCCTGATACGATTGGTGAAAATGATGTATACAAATGGGAACCTGAAGAATTGCCTGGTCTGTCTTTACTACAAACCGGAGATAGACAGTGGTACTTTTTTACTCCAAGAGATAGGAAATATCCCAATGGGGCCAGGTCTAATCGTGCAACAAGACATGGCTACTGGAAAGCAACTGGAAAAGATCGAAACATCACTTGCAATTCTAGGAATGTCGGTGTTAAAAAGACCCTGGTTTTCTATAAAGGCAAAGCACCTAGTGGTGAGCGCACTGATTGGGTTATGTATGAGTATACCTTGGATGAGGAGGAGCTTAGGAGATGCCTAAATTTTAAGGAATACTATGCACTTTATAAGGTTTTTAAGAAAAGTGGACCTGGTCCTAAAAATGGAGAACAATATGGGGCCCCATTTAATGAAGAGGAGTGGGCTGAAGATGAAGATGTTGACTTCAATGACGTCACTGCTGACATTGAGTTTCCTAGGAAGCAGGTTGGTGAGGATATGCCTCCTGAGATTGTTAGTATTAGAGGTCATGCTGAGTCATCATGGGATGGTGATAATATTGATGATATGATCAATGGGATTCTCGACAATCCTGCCTTTAATATGCCACATGTAGCCGAGAATGCATATTCTTTATCTCAGATTGGGGAAGAAGGGACTCAATGTACTGCTGTGCAGCAATTAACCAGTGATCTGATAGCCCGAGCACCCCTCCAGGCACCATACCCTGTTAGTCAACAATGCAATGTACAGACAAGTGACTTCGTTCAGTCAAGCTTCACTCAATTGCCAATGCATGAATCATCCACGCTTACCTCAGCTTCAGTAATTCACCAGACTTATTACCCTGATAGTCAGCAATATGATTCACAATTGAGCTATGAATTTAATCCAAATTCCTGTCAGTTACCTTTATATGAAACATCAGAGGTCACCTTGTCTACATCTGTCCATGAGCATAAGAGGAAAATTCCCGGAGAGGGTGACTTCCTAGAGATTGACGACCTCTTAAGTCCAGATCCCATATTGTCGAATGCAGATGAATCTACTGATGGCCTGCATATTGACGACTTAGATGGAATGGGTGACTTTGACCTGTATCATGATACTGCCTCGGCTTTCGAGGATATGGGGTCAATTGATAATGATTTGCTCTCCTTTATGAACACATTGGGTGACAATGATGTTGTCAACGATGAGTTTCAGATGCCCCAAAATCCTGAGGTTTCGTATCATATGGATCATCAACTTTGGAGTGACAGTCAAAGAAGTGCCTTTCATTCAGCTGAACTGATTGATGGCGCTTTATCTCAACAAACATCAGGCACATTATATGAATCTGGAACTTTTTCAAATGACACCATTCACAATAGTAACAGTAATGAGGGAGCTGGTGCAAGAAGTCGTTTCTCTTCTGCACTTTGGGCTTTTGTGGAATCAGTGCCCACTAATCCAGCATCAGCTTCAGAAGGAAAATTAGTGAATCTGGCGTTGGAAAGAATGTCTAGCTTCAGAAGGTTGAAAAACCATGTCAAGCCAACTGTCGATTCGGCAGGTAATGACAATTCAAGCACACGTCAATCTCCAAGAAAAAGAGTATCTTTCATTTTCTTTCCAGTTATTGTTGCCTTTTGTGCTATGTTGTGGATTTCAATGGGAACAATCAGACTACTTGGAATGCCGAGCTTCACTAATTATAATTATTAG 1854 0.4207 MTVASDTSPGSAGKGNVKAWPPGFRFHPTDEELVLYYLKRKICRKRLRPDTIGENDVYKWEPEELPGLSLLQTGDRQWYFFTPRDRKYPNGARSNRATRHGYWKATGKDRNITCNSRNVGVKKTLVFYKGKAPSGERTDWVMYEYTLDEEELRRCLNFKEYYALYKVFKKSGPGPKNGEQYGAPFNEEEWAEDEDVDFNDVTADIEFPRKQVGEDMPPEIVSIRGHAESSWDGDNIDDMINGILDNPAFNMPHVAENAYSLSQIGEEGTQCTAVQQLTSDLIARAPLQAPYPVSQQCNVQTSDFVQSSFTQLPMHESSTLTSASVIHQTYYPDSQQYDSQLSYEFNPNSCQLPLYETSEVTLSTSVHEHKRKIPGEGDFLEIDDLLSPDPILSNADESTDGLHIDDLDGMGDFDLYHDTASAFEDMGSIDNDLLSFMNTLGDNDVVNDEFQMPQNPEVSYHMDHQLWSDSQRSAFHSAELIDGALSQQTSGTLYESGTFSNDTIHNSNSNEGAGARSRFSSALWAFVESVPTNPASASEGKLVNLALERMSSFRRLKNHVKPTVDSAGNDNSSTRQSPRKRVSFIFFPVIVAFCAMLWISMGTIRLLGMPSFTNYNY* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00409 617 MobiDBLite consensus disorder prediction 1 21 - -
Pte16g00409 617 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
Pte16g00409 617 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 300 - -
Pte16g00409 617 Gene3D NAC domain 29 172 IPR036093 GO:0003677|GO:0006355
Pte16g00409 617 FunFam NAC domain-containing protein 100-like 29 174 - -
Pte16g00409 617 ProSiteProfiles NAC domain profile. 20 170 IPR003441 GO:0003677|GO:0006355
Pte16g00409 617 SUPERFAMILY NAC domain 18 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00409 Pte-Chr16 5742583 5746685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00409 5 608 NAC Transcription Factor Family AT1G34190 39.502 6.47e-128 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte16g00409 NAM 1.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00409 - - qsa:O6P43_008042 568.155