Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00407 ATGGAGTCTCTTCCGTACTTTGCAGCATTGTTTGATTCATTGGATGATTGTCTCCCACTTGACAGTACTGACAGATTGGGAATAGAGAAGAATCTTCTTGGCAAAGAGATCAAAACTACACTCAACTCTGATGTGGATTCTTCAAACTGTCCAAAGTATGAGAAGATGGAAACATGGAAGGCAAGAATGGAAAGTCATGGATTTTCAGGAGTTAAGATAAGCTCAAAGTCTATAATTCAAGCAAAGCTGCTTTTGAAGATGAGAACTCAACATTGCCCAATCCAAATTGACAGAGAAGGTGGTGGTGGGTTTAGAATTACTGAAAGAGATGACGGAAATGCTCTCTCTTTAGGTTGGCAAGATAGGTTTCTGCTCACTGCCTCTGCATGGCACTGTATCTGA 402 0.408 MESLPYFAALFDSLDDCLPLDSTDRLGIEKNLLGKEIKTTLNSDVDSSNCPKYEKMETWKARMESHGFSGVKISSKSIIQAKLLLKMRTQHCPIQIDREGGGGFRITERDDGNALSLGWQDRFLLTASAWHCI* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00407 133 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 127 IPR005202 -
Pte16g00407 133 Pfam GRAS domain family 1 130 IPR005202 -
Pte16g00407 133 ProSiteProfiles GRAS family profile. 1 131 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00407 Pte-Chr16 5721269 5721670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00407 1 132 GRAS Transcription Factor Family AT1G50420 38.636 2.86e-19 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte16g00407 GRAS 1e-22 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00407 - - palz:118035514 212.231