Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00405 ATGATCGTGGGAGGAAGAGAGTTGTCAGAGGCAACTCATGTATCTCAGAAATGTATCACAAAAGAATACAGAACACCAATAACTCTCTTCATCAATAACAAGGAACTACAGCTGCTCTGTAGTCGCAGACGTAGACACATTGCCGAACTGCGACAGAATATTGTGATTCGTGCTAACCATTTTCTGGTCCGAGTGGCGAAGAGTCATTTATATCATTATGACGTATCGATAACACCTGCAATTACATCAACGGAAGTCAGCAGAGATGTAATAGAAGAGCTCATTCAGTTATATGGCGAGTCACACTTGGGAAATCATAAACCTGCTTATGATGGCCGAAAGAACCTTTTCACTGCAGGGGAGCTGCCATTTAAATCACAACTCTTTGTGGTACATTTGGGTGAAAATCAACCTGGATCCTCCGTTTCAGCTAGGAGACCGAGAGAATTCAAAGTAGAAATCAAATATGCTTCCCGGCCTGATCTTCATCATCTGCAAGCATTTTTGGATGGAAGGCAGCGAGATAATCCACAAAACGCAATTCAAGCTTTGGATGTTGTTCTTCGTGCACTTTGTGTTGAGAAGGTGTGA 591 0.4247 MIVGGRELSEATHVSQKCITKEYRTPITLFINNKELQLLCSRRRRHIAELRQNIVIRANHFLVRVAKSHLYHYDVSITPAITSTEVSRDVIEELIQLYGESHLGNHKPAYDGRKNLFTAGELPFKSQLFVVHLGENQPGSSVSARRPREFKVEIKYASRPDLHHLQAFLDGRQRDNPQNAIQALDVVLRALCVEKV* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00405 196 SUPERFAMILY PAZ domain 54 189 IPR036085 GO:0005515
Pte16g00405 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 51 192 - -
Pte16g00405 196 Pfam N-terminal domain of argonaute 53 188 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00405 Pte-Chr16 5700397 5702422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00405 55 196 Eukaryotic Initiation Factors Gene Family AT1G48410 50.000 3.47e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00405 K11593 - qsa:O6P43_028455 180.259