Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00404 ATGATTGGTGATGCTGTGGAATGTCAGAGGGGTTACTTTCAGAGCGTGCGACCACTTCAACAGGGATTATCTCTTATTTTTGATGTGACAGCGACGGCGTTGTATGAAGCCATTGGTGTGACTGATTTTATTGAGAAATGTTTGAATATTAATATCTCGCAACCTTTATCTGATAGCAATCGTGTTAAGGTTGAGAAAGCCTTGAAAGGAGTAAAGGTTGAAGTGAAACACTTGAATTACATTAGAATTTACAAAGTTTCAGAGGTGACAAAAGAACCAATACGCCATTGCATGTTTTCTCTTGATGATGGTAGAATGCTTTCTGTTATTCAATATTTTCATGAGAAGCACAACATTGTGCTTAAGCATGTCTCTCTTCCTGCACTTCAGACTGGGAGTGGTTCCAAACCTGTTTTTCTACCTTTTGAGCTTTCAACGATTGCACCTGGACAAAGGTATTCACAGAGACTAAATGAAAATCAAGTTAGAAATTTTCTAAAAGCAACTTGTCATCCTCCATCTGACAGAGAGCGCTACATTAAACAGATAGTTAGATATAATGATTTCAATGGAGATGACCGTGTAAGAAAGGAATTTGGGATTCAAGTAAATGAAGATATGACAACGGTACATGCTCGAGTTTTGCCAGCATCAATGCTTAGGTATCATGACATGGGGAAGGAGAAAGTGGTTGATCCAAAAATGGGCCAGTGGAATATGATAAACAAGAGAATGAGAAATGGTGGCAAAGTGGAGTATTGGACATGTGTGAGTTTTTCCACTCAAGTACTACGCAGGGATAAGGTCATCGTATTTTGTGATAAATTGGTCAACATATGTGCTAGCAATGGGATGGATTTTACTCGAAAACCTGTCCTTCCGATAAGCACCAGAAATCCTCTTCAGATCGATGCTGCCCTCAAGGATATCCACAGAGAATCAGTGTCAAAGTTACAGCTGCTGATAATTATCTTGCCTGATTTGACTAGATCTTACGTGAGCTGGAAGATAAAACGTATATGTGAAACAGAGCTGAGATTGGTTACACAGTGTTGTAGACCCCAGCAGGCATCAAAACTGCAAGTGGATTATTTGGCAAATGTTTCCCTCAAGATAAATGTGAAGGTCTGCTTTCGTTGGGGGCAAAATAGCGTGTTGAATGATGCGTTGTTGAGAAGAATTCCACTTGTCAGTGATCGACTTGCTATAATCTTTGGCGCTGATGTCACACATCCACAGACTGGGGATGACTTTAGTCCATCAATAGCAGCTGTTGTTGCATCTATGGATTGGCCAGAGATCACAAAATACAAGGCACTGGTTTCTGCACAAGGTCACAGTGATGAAATCATACACGATCTCTATAGAAGTTATGAGGATCCTAAAAAGGGAACCGTCCATTTGGGAATGATACGGTGA 1419 0.4031 MIGDAVECQRGYFQSVRPLQQGLSLIFDVTATALYEAIGVTDFIEKCLNINISQPLSDSNRVKVEKALKGVKVEVKHLNYIRIYKVSEVTKEPIRHCMFSLDDGRMLSVIQYFHEKHNIVLKHVSLPALQTGSGSKPVFLPFELSTIAPGQRYSQRLNENQVRNFLKATCHPPSDRERYIKQIVRYNDFNGDDRVRKEFGIQVNEDMTTVHARVLPASMLRYHDMGKEKVVDPKMGQWNMINKRMRNGGKVEYWTCVSFSTQVLRRDKVIVFCDKLVNICASNGMDFTRKPVLPISTRNPLQIDAALKDIHRESVSKLQLLIIILPDLTRSYVSWKIKRICETELRLVTQCCRPQQASKLQVDYLANVSLKINVKVCFRWGQNSVLNDALLRRIPLVSDRLAIIFGADVTHPQTGDDFSPSIAAVVASMDWPEITKYKALVSAQGHSDEIIHDLYRSYEDPKKGTVHLGMIR* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00404 472 Pfam PAZ domain 61 164 IPR003100 GO:0005515
Pte16g00404 472 SUPERFAMILY PAZ domain 32 190 IPR036085 GO:0005515
Pte16g00404 472 Pfam Mid domain of argonaute 233 312 IPR032473 -
Pte16g00404 472 FunFam Argonaute 10 214 387 - -
Pte16g00404 472 Pfam Argonaute linker 1 domain 3 36 IPR014811 -
Pte16g00404 472 CDD PAZ_argonaute_like 37 148 - -
Pte16g00404 472 ProSiteProfiles PAZ domain profile. 38 149 IPR003100 GO:0005515
Pte16g00404 472 Pfam Argonaute linker 2 domain 175 222 IPR032472 -
Pte16g00404 472 SUPERFAMILY Ribonuclease H-like 307 456 IPR012337 -
Pte16g00404 472 Gene3D - 214 387 - -
Pte16g00404 472 Pfam Piwi domain 321 454 IPR003165 GO:0003676
Pte16g00404 472 SMART DUF1785_2 2 37 IPR014811 -
Pte16g00404 472 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 459 - -
Pte16g00404 472 SMART PAZ_2_a_3 42 169 IPR003100 GO:0005515
Pte16g00404 472 Gene3D - 393 463 IPR036397 GO:0003676
Pte16g00404 472 ProSiteProfiles Piwi domain profile. 320 472 IPR003165 GO:0003676
Pte16g00404 472 Gene3D paz domain 31 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00404 Pte-Chr16 5680431 5700330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00404 2 472 Eukaryotic Initiation Factors Gene Family AT1G48410 49.375 5.24e-151 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00404 K11593 - qsa:O6P43_028455 556.214