Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00393 ATGAGAGCAAGAAGCGAAACACTCGTAAACCTCTCCGTTTCTCTCTTCTCCTCAGTAAAGCGTCAACCAATTTCCAACTTCACATCATCCGCTTGCACTTTCCTTTTCTCCAAGCTTCTATCTACTAAAACCAACGACGTCAATAACATTGTTGAAGAGGAGAAGACGCAGTTGAAGTCCAAAAGGGACATTTCTATCCTAGAGAATTTCAGAAATAGAGCCTCCAAAGGTTCTTCTAAAACCCCATATGCTGAAACTCAAGAATCAGCTCAAACAGTATCATCAAGTTCTTGTACTGACAAGGTGAGTGAACATGGTTTGAAGAATTCTGAGAGTCAAGCCACCAGTGTTGTGGTAAGTTTTAAAGATTTGGGTCTTAGGAAGGAGCTCGTTGAAGCTTTGGAGGAGATGGGTGTGTTTGTCCCTAGTGAGATTCAGTGTGTTGGGATTCCCGCTGTATTGGAAGGGAAGAGTGTGATATTGACTTCCGAATGTGGGTCTGGTAGGACTTTGGCGTACTTGTTGCCATTTATTCAGCGGCTGAAATGGGATGAGGGGTTAACTTCAAAAGCGGAGTGCCCTCGGGCGATTGTGCTATGTGCCACTGAGGAGCAATCTGAACAGTGCTTTGACATTGCTCAGTTTGTTCTCTATAAATCATCTTGGAAATCTGGAAACGAAGATGCTTCAGGAAAAGATTCATCAAATTTTTCGATCGGCCTTCTAATTGGGACCCCTAGTGAGATTATTAATTACCTCAATGAGGGGAGTTTGTCTCTTGATGAAGTAAAATACTTGGCATTTGATGAGGTGGATTTCATGTTCAAAAGTGGCCTTGGTCCCGAAATTTCCAAGATTGTAACTCAGTTAAAAAAGAAACCCACCAAGTCCTCTGCAAAAGGATTGCACGCTGTTTTTGTCACTTCATCAATATCAAAGCTATTAGGTGAGCAGTCTCCTCTTGTGAAGCAACTAGAGCAAAAGCATGCAGGAAATATTTCTGCAATGATGTTGGAGATGGAACAAACCGAAGTCTTCCACTTGACTGAGTCTGCAAATGTTTTGAAGAATAAAGTAGCCAAGGCAATGGGTTCCCTTCTAGAGTCAAATCAGAACTTCCTTTAG 1125 0.4213 MRARSETLVNLSVSLFSSVKRQPISNFTSSACTFLFSKLLSTKTNDVNNIVEEEKTQLKSKRDISILENFRNRASKGSSKTPYAETQESAQTVSSSSCTDKVSEHGLKNSESQATSVVVSFKDLGLRKELVEALEEMGVFVPSEIQCVGIPAVLEGKSVILTSECGSGRTLAYLLPFIQRLKWDEGLTSKAECPRAIVLCATEEQSEQCFDIAQFVLYKSSWKSGNEDASGKDSSNFSIGLLIGTPSEIINYLNEGSLSLDEVKYLAFDEVDFMFKSGLGPEISKIVTQLKKKPTKSSAKGLHAVFVTSSISKLLGEQSPLVKQLEQKHAGNISAMMLEMEQTEVFHLTESANVLKNKVAKAMGSLLESNQNFL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00393 374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 329 IPR014001 -
Pte16g00393 374 Gene3D - 317 369 - -
Pte16g00393 374 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 147 IPR014014 GO:0003724
Pte16g00393 374 SMART ultradead3 138 328 IPR014001 -
Pte16g00393 374 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 41 313 - -
Pte16g00393 374 MobiDBLite consensus disorder prediction 75 97 - -
Pte16g00393 374 Pfam DEAD/DEAH box helicase 144 298 IPR011545 GO:0003676|GO:0005524
Pte16g00393 374 Gene3D - 72 316 IPR027417 -
Pte16g00393 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 299 IPR027417 -
Pte16g00393 374 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 294 371 IPR002004 GO:0003723
Pte16g00393 374 SMART poly_2 307 369 IPR002004 GO:0003723
Pte16g00393 374 SUPERFAMILY PABC (PABP) domain 314 366 IPR036053 GO:0003723
Pte16g00393 374 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Pte16g00393 374 Pfam Poly-adenylate binding protein, unique domain 320 363 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00393 Pte-Chr16 5590997 5593273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00393 120 277 Eukaryotic Initiation Factors Gene Family AT5G11200 30.909 2.78e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00393 - - qsa:O6P43_004140 352.058