LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte16g00380	ATGGGTTCTGCTCATACCAAACCTTCAGAGAATCCAACACCTACAGGCCTTGAGAGGACGAAAACGGTAAGAGGGTATGAGAGGGATAGAGATTTTGCTAATCCTAGACGATCAACAGGTCAAAGATACACACGTGTGGATTCTGATAGGCGAGATTTTCATCAGACTAGAAGGAAAGGTGCTGAGCGCGTGAGTGGTGATACATCATCAGGCAGCGGCAGAAGTTACGGCAAGACTAGGAGTAAGAAAGATGGTGGCGGTGCAGGGGAAACTGGGAGTTTGGAGAAGTTAAAGAATGACCGAGTGATAAGATCAGATGGTAGACGAAGGAGTGGAAAGGAGAAGAAGCAAGTTGAAGAGGAAATGGTGAATGGATGGCCTAAATGGCTTGTTGATAATGTTCCCCAGAAATTGTTAGCTGGCTTGGTCCCCAAGAGTGCTGAATCGTATGAAAAGATTGATAAGGTAGGGCAAGGAACATACAGCAATGTTTTCAAAGCTCGCGATCGTGAAACAGGAAAAGTCGTTGCCCTGAAGAAGGTCAAGTTTGATACATCAGAACCTGAGAGTATTAAATTCATGGCAAGAGAAATCATGATTCTACAAAGGTTGGATCATCCAAATATTGTCAAGCTTGAAGGCTTGGCCACGTCAAGGTTGCATTACAGTCTATATCTTGTTTTCGAATACATGCAAACAGACTTGGCAAGGATTATATCTCGACCTGAAGAGAGACTGACTGAACCACAGGTTAAATGCTATATGCAGCAACTACTTTCAGGTTTACAGCATTGCCATGAGAGAGGAATTTTGCACCGTGACATCAAGGGATCTAATATTTTGATTGATAAAAATGGGATGCTTAAGATTGCAGATTTTGGGCTTGCAAATTTTTATGGTTCAAGAAATAAACACCCATTGACAAGCAGAGTTGTGACATTGTGGTACAGAGCTCCTGAATTGCTGCTGGGTGCCACAGATTATGGAGTTGGTATTGATCTGTGGAGTGCAGGATGCCTCTTAGCAGAAATGTTTACAGGTAGTCCAATAATGCCCGGTAGATCAGAGGTTGAGCAGCTATATAAAATCTTCAAACTATGTGGCACACCCCCAGAGGAATACTGGAAAAGATTTAAGAATTCTAAAGCTCTTAGACCTCCAAAGTCTTACAAACCTAGTCTTATCGAAAATTTCATGCATCTTCCTCCATCTTCGCTGGACCTATTGAGTAAATTGCTTGCTATAAACCCTGGATATCGTGGTTCTGCATCTTCAGCCCTAAACAATGAGTTCTTTTCGACAATGCCACTGGCATGCTCCCTCTCAGGTCTTCCCGTGGTGTACAATGAGGAGGATGAGCAAAGAGAAGCTATAGAACAGATAAAGTACATGAATGCTTCAATGAAACGAAGGTCTCATGAGCGCCGCAAGAAAGAGCTGGCAGCTACAAGTTTGGGAGAAGATGACAAATTATCTTGCAAATTGGAGCTCAAAACGACTGCAGAAAGACATGTACAGAATGAAGAGCCGGGCAGCGCAACCAGCAGTACTTCTTCTGAAGCAAAGCCTGATCGGTTGAAGCACAAACCTCCTCTCATTCCTCCTCCAGTAACATCATATCAGAAACTTGCCCCAAAACCTAGTGATGTCTATTCTGACGATGGTCATGTCAATGAGGTTTCCCTACCACCCATGCCAAAACTACAAACTAACTACAAGACAGCTGAGCGCATGTACAGGGTGATAAACAATTTCAACAGATCTGTGTCTACTAAAGAGTACAGAACCTTGAATGAGAGACAGCACCTAGTCCGTGTTGCAATTGATGATTGA	1833	0.4321	MGSAHTKPSENPTPTGLERTKTVRGYERDRDFANPRRSTGQRYTRVDSDRRDFHQTRRKGAERVSGDTSSGSGRSYGKTRSKKDGGGAGETGSLEKLKNDRVIRSDGRRRSGKEKKQVEEEMVNGWPKWLVDNVPQKLLAGLVPKSAESYEKIDKVGQGTYSNVFKARDRETGKVVALKKVKFDTSEPESIKFMAREIMILQRLDHPNIVKLEGLATSRLHYSLYLVFEYMQTDLARIISRPEERLTEPQVKCYMQQLLSGLQHCHERGILHRDIKGSNILIDKNGMLKIADFGLANFYGSRNKHPLTSRVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFTGSPIMPGRSEVEQLYKIFKLCGTPPEEYWKRFKNSKALRPPKSYKPSLIENFMHLPPSSLDLLSKLLAINPGYRGSASSALNNEFFSTMPLACSLSGLPVVYNEEDEQREAIEQIKYMNASMKRRSHERRKKELAATSLGEDDKLSCKLELKTTAERHVQNEEPGSATSSTSSEAKPDRLKHKPPLIPPPVTSYQKLAPKPSDVYSDDGHVNEVSLPPMPKLQTNYKTAERMYRVINNFNRSVSTKEYRTLNERQHLVRVAIDD*	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte16g00380	610	MobiDBLite	consensus disorder prediction	501	540	-	-
	Pte16g00380	610	ProSitePatterns	Protein kinases ATP-binding region signature.	156	179	IPR017441	GO:0005524
	Pte16g00380	610	Pfam	Protein kinase domain	150	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte16g00380	610	PANTHER	CELL DIVISION PROTEIN KINASE	148	436	-	-
	Pte16g00380	610	ProSiteProfiles	Protein kinase domain profile.	150	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte16g00380	610	FunFam	Putative serine/threonine-protein kinase	233	470	-	-
	Pte16g00380	610	MobiDBLite	consensus disorder prediction	1	18	-	-
	Pte16g00380	610	FunFam	probable serine/threonine-protein kinase At1g54610	137	232	-	-
	Pte16g00380	610	Gene3D	Phosphorylase Kinase; domain 1	142	232	-	-
	Pte16g00380	610	MobiDBLite	consensus disorder prediction	1	119	-	-
	Pte16g00380	610	CDD	STKc_CDK9_like	150	432	-	-
	Pte16g00380	610	MobiDBLite	consensus disorder prediction	94	119	-	-
	Pte16g00380	610	Gene3D	Transferase(Phosphotransferase) domain 1	233	481	-	-
	Pte16g00380	610	MobiDBLite	consensus disorder prediction	21	64	-	-
	Pte16g00380	610	MobiDBLite	consensus disorder prediction	506	520	-	-
	Pte16g00380	610	SMART	serkin_6	150	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte16g00380	610	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	270	282	IPR008271	GO:0004672\|GO:0006468
	Pte16g00380	610	SUPERFAMILY	Protein kinase-like (PK-like)	145	437	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte16g00380	Pte-Chr16	5384028	5387666	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte16g00380	145	471	Core Cell Cycle Gene Families	AT5G10270	44.253	3.09e-93	294

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pte16g00380		Pkinase	5.1e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte16g00380	K08819		-	qsa:O6P43_008073	707.983