Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00365 ATGTGCTTGCTAAAGGTGGCGAACCCAGGAGGCTCAAGTGAGTACGTCAAGATTACAACTCAACAAGGCGGTGGCAGTAGTGGTGGGGCTGGTGGTGGCGATGAAGAAGAAACTAGACCGTACGAAGAACATAAAGGAGTAGCAAGAGGAAGCTCAAGTATAACACAGCCGTCGCAACAATTGAACCTGCAAACACAGCAACAAAGGGGAACGGTGTCTTCAGACAATCCAACAGTGTTATCAGAGTTTAGCAGAGTTGGGGAACAGACAGTTATGGTGTCAGCACTGACGCAAGTTGTGTCAGGACATAGAGACAGTCATCGTGAATGGGTCTATGGATGTGGTTTGCCTATGACATCAGATTTTGGACAGCCTGCTGCTTCACCAATTTTGTCTGCTTATTCTTCTACTACTTCGGGCTCTGTGTTGGGTTCTGGTTCCTTTGTTGGCTCTGGTTCCTGGGTTGGGCACAAGAGAGGGCGTGAAGAACAACTACAACAACAGGTTGGTACTCCTCACCTCATGGAGTCTGCTTCAAGGATTTACAAAAGCTATGCTGATTACAAAGCGTCATCTCAAAAAGGGGAGTCATCTTCAGAGGAAGCAACAACAACAGTCACGACCACCGCTCCAACTCCAACCACCACCGCCGCCGGTCCGGCCACCCCAGCAAGTGAGACAGGTTCATATGAAGAAACAGGAGAAAGGAGGAGGAGATACAGAGGAGTGAGACAGAGACCATGGGGGAAATGGGCAGCTGAAATTCGTGATCCCCACAAGGCAGCAAGAGTCTGGCTTGGCACGTTTGACACTGCTGAGGCTGCAGCAAGAGCCTATGATGAAGCTGCCTTGAGATTCAGAGGTAACAGAGCAAAGCTTAATTTCCCAGAAAATGTCAGAACAGTGCAACCAGCTCAGAGTTTTCCATCTTCAAGTTTAGCCATTTCGGATTCTCCAGCAACCCGTTTGTCTCCAATTCAGACCCCCCAGCAATTGCAGCCATCTTTTCTTCACTCTCAAGGTTTTCAAGGGTCTTCCCCCGAGTTTCTTAGGGATTTCTGGGAATATTCCCAACTGCTACAAAGCACAGGTGACTTCCATAGCCAGCTACAGCAACAACCTTCAAGTTTCTTAGAGCAATTCTACTACAATTCACAATTTGCTTCGCTTCATTCATCGATGCTACCACCAGCACCAGCACCATCATTGTTATCTTCTTCTTCTTCATTTTCCTCATTAGCTTCATATGAACCTTCTGGTTCTTCATCCTCTTCATCATTTCCTCTGTTTCAACATCAGCAATTAGGTTATCCCCAAATCCAAGGACACCCCAGTTGGAGTGGTACAGGTTCAGATTTCTCCAGTTTTCCTTGGTCAGATTCCAGTCAGTATCCTCCTCCTTCATCAAGTGGCTGA 1416 0.4739 MCLLKVANPGGSSEYVKITTQQGGGSSGGAGGGDEEETRPYEEHKGVARGSSSITQPSQQLNLQTQQQRGTVSSDNPTVLSEFSRVGEQTVMVSALTQVVSGHRDSHREWVYGCGLPMTSDFGQPAASPILSAYSSTTSGSVLGSGSFVGSGSWVGHKRGREEQLQQQVGTPHLMESASRIYKSYADYKASSQKGESSSEEATTTVTTTAPTPTTTAAGPATPASETGSYEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRTVQPAQSFPSSSLAISDSPATRLSPIQTPQQLQPSFLHSQGFQGSSPEFLRDFWEYSQLLQSTGDFHSQLQQQPSSFLEQFYYNSQFASLHSSMLPPAPAPSLLSSSSSFSSLASYEPSGSSSSSSFPLFQHQQLGYPQIQGHPSWSGTGSDFSSFPWSDSSQYPPPSSSG* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00365 471 PRINTS Ethylene responsive element binding protein signature 240 251 IPR001471 GO:0003700|GO:0006355
Pte16g00365 471 PRINTS Ethylene responsive element binding protein signature 262 278 IPR001471 GO:0003700|GO:0006355
Pte16g00365 471 MobiDBLite consensus disorder prediction 13 27 - -
Pte16g00365 471 MobiDBLite consensus disorder prediction 438 471 - -
Pte16g00365 471 MobiDBLite consensus disorder prediction 192 229 - -
Pte16g00365 471 ProSiteProfiles AP2/ERF domain profile. 239 296 IPR001471 GO:0003700|GO:0006355
Pte16g00365 471 PANTHER DNA-BINDING DOMAIN 200 368 IPR044808 GO:0003700|GO:0009873
Pte16g00365 471 MobiDBLite consensus disorder prediction 1 78 - -
Pte16g00365 471 MobiDBLite consensus disorder prediction 304 325 - -
Pte16g00365 471 SMART rav1_2 239 302 IPR001471 GO:0003700|GO:0006355
Pte16g00365 471 Gene3D AP2/ERF domain 238 298 IPR036955 GO:0003700|GO:0006355
Pte16g00365 471 CDD AP2 247 298 IPR001471 GO:0003700|GO:0006355
Pte16g00365 471 MobiDBLite consensus disorder prediction 192 241 - -
Pte16g00365 471 Pfam AP2 domain 239 288 IPR001471 GO:0003700|GO:0006355
Pte16g00365 471 FunFam Ethylene-responsive transcription factor 2 238 297 - -
Pte16g00365 471 MobiDBLite consensus disorder prediction 49 78 - -
Pte16g00365 471 SUPERFAMILY DNA-binding domain 239 297 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00365 Pte-Chr16 4921655 4923770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00365 231 310 AP2-EREBP Transcription Factor Family AT2G33710 73.750 9.40e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte16g00365 AP2 9.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00365 - - qsa:O6P43_004169 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00365 16 4921655 4923770 Pte16g00365 16 4921655 4923770 RCT