Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00364 ATGTCTCACAGGAAGTTCGAGCACCCCAGGCACGGGTCTCTGGGATTTCTTCCCAGGAAGCGAGCTTCTCGTCAAAGAGGAAAAGTGAAGGCCTTCCCTAAGGATAATCCCGCTGAGAAATGCAGGCTCACTTCCTTCTTGGGATACAAGGCTGGCATGACTCATATCGTCAGGGAGGTCGAGAAGCCTGGTTCCAAGCTTCACAAGAAGGAGACATGTGAAGCAGTCACTATTATTGAGACTCCTCCCATGGTCATTGTTGGTGTTGTGGGCTATGTCAAGACTCCTCGAGGTCTTCGCACCCTGAACACTGTCTGGGCTCAGCACCTGAGTGAGGAGGTTAGGCGCAGGTTTTACAAGAACTGGTGCAAGTCTAAGAAGAAGGCTTTTACCAAGTATTCCAAGCAGTATGAAACCCCTGAAGGGAAGAAGAACATTGAAGCCCAGCTTGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTCTTGGCTCACACTCAGATTAGGAAAATGAAGGGACTGAAGCAGAAGAAAGCACATCTCATGGAAATTCAGGTTAATGGTGGTACAATTGCCCAGAAAGTTGACTATGCTTACAGTTTCTTTGAGAAGCAAGTCCCAGTTGATACTGTTTTCCAGAAGGATGAGATGATTGACATCATTGGTGTGACAAAGGGTAAAGGTTATGAGGGTGTTGTTACTCGTTGGGGTGTCACCCGTCTTCCTCGCAAAACCCACAGAGGTCTGCGAAAGGTAGCTTGTATTGGTGCTTGGCATCCTGCTAGAGTTTCTTTCACTGTTGCTAGGGCTGGTCAGAATGGTTATCACCACAGAACTGAAATGAACAAGAAGATCTACAAGCTTGGCAAGACTGGTCAGGAATCCCACACAGCTCTTACTGAGTTTGACAGGACTGAGAAAGACATAACTCCAATGGGAGGCTTCCCTCACTACGGTATTGTAAAGGATGATTATCTGTTGATCAAGGGGTGCTGCGTTGGACCAAAGAAGAGAGTTGTAACTCTGCGTCAGTCTCTAGTTAAGCAGACATCTCGATTGGCTCTTGAAGAGATCAAACTCAAGTTTATTGATACATCCTCAAAGTTTGGCCATGGCCGCTTCCAGACCACACAAGAGAAACAGAAGTTCTATGGAAGGGTGAAGGCATAA 1170 0.4667 MSHRKFEHPRHGSLGFLPRKRASRQRGKVKAFPKDNPAEKCRLTSFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEEVRRRFYKNWCKSKKKAFTKYSKQYETPEGKKNIEAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDYAYSFFEKQVPVDTVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKTGQESHTALTEFDRTEKDITPMGGFPHYGIVKDDYLLIKGCCVGPKKRVVTLRQSLVKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRVKA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00364 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Pte16g00364 389 FunFam Ribosomal protein L3 265 389 - -
Pte16g00364 389 FunFam 60S ribosomal protein L3 83 207 - -
Pte16g00364 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Pte16g00364 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Pte16g00364 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Pte16g00364 389 Gene3D - 83 207 - -
Pte16g00364 389 MobiDBLite consensus disorder prediction 1 34 - -
Pte16g00364 389 FunFam 60S ribosomal protein L3 44 137 - -
Pte16g00364 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 384 IPR045077 GO:0003735|GO:0005840|GO:0006412
Pte16g00364 389 FunFam 60S ribosomal protein L3 226 274 - -
Pte16g00364 389 Gene3D Translation factors 44 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00364 Pte-Chr16 4896695 4899094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00364 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 86.305 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00364 K02925 - mof:131162349 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00364 16 4896695 4899094 Pte16g00364 16 4896695 4899094 RCT