Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00361 ATGTTCACACTGTTACTGTTTGAGTCTTCACAGTCTTTGGTGGCCAACGAAGATTTTCAGCATATATTACGTTTGCTGAACACCAACGTTGATGGAAAGCAGAAAATAATGTTTGCTCTCACTTCCATTAAAGGTATTGGTCGGCGGTTCGCTAACATCGCCTGCAAGAAGGCTGACATCGACATGAACAAAAGGGCTGGTGAGCTAAGTGCTGCTGAGTTGGACAATCTCATGACTGTCGTTGCCAACCCACGACAGTTCAAGATCCCAGATTGGTTTTTGAATAGGAAGAAGGATTACAAGGATGGCAAGTACTCTCAGGTGGTGTCAAATGCTTTGGACATGAAGCTGAGAGATGACTTGGAACGACTGAAGAAAATTAGAAACCATCGTGGGCTGAGGCACTACTGGGGCCTTCGTGTCCGTGGACAGCACACCAAAACCACTGGCCGCAGAGGAAAAACTGTTGGTGTCTCTAAGAAGCGCTGA 489 0.4642 MFTLLLFESSQSLVANEDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFANIACKKADIDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00361 162 SUPERFAMILY S13-like H2TH domain 23 162 IPR010979 GO:0003676
Pte16g00361 162 Gene3D 30s ribosomal protein s13, domain 2 102 152 IPR027437 -
Pte16g00361 162 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 12 162 - -
Pte16g00361 162 FunFam 40S ribosomal protein S18 11 90 - -
Pte16g00361 162 Hamap 30S ribosomal protein S13 [rpsM]. 22 162 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte16g00361 162 Pfam Ribosomal protein S13/S18 24 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte16g00361 162 ProSitePatterns Ribosomal protein S13 signature. 131 144 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte16g00361 162 ProSiteProfiles Ribosomal protein S13 family profile. 25 155 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte16g00361 162 FunFam 40S ribosomal protein S18 102 153 - -
Pte16g00361 162 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 9 162 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte16g00361 162 Gene3D - 11 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00361 Pte-Chr16 4854159 4855439 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00361 12 163 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 94.737 1.41e-107 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00361 K02964 - qsa:O6P43_008067 303.523