Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00357 ATGGAACTCTACGATTCGTATATCGGCACGTCGCTGGTTGCAAATGAAGATTTTCAGCACATACTGCGTCTGCTTAACACCAATGTAGACGGGAAGCAGAAGATTATGTTTGCTCTTACCTCCATTAAAGGGATCGGTAGGCGATTTGCCAATATTTGTTGCAAGAAAGCTGATATCGACATGAACAAAAGAGCTGGTGAGCTGACTCCTACTGAACTCGACAATCTCATGACTGTTGTCGCCAACCCACGACAGTTCAAAATCCCAGACTGGTTTTTGAACAGGAAGAAGGATTACAAGGATGGCAAATTCTCACAGGTGGTCTCAAATGCACTGGACATGAAGTTGAGAGATGATTTGGAGAGACTGAAGAAGATCAGGAATCACCGTGGTTTGAGGCATTACTGGGGTCTCCGTGTCCGTGGGCAACATACCAAGACCACCGGCCGTAGGGGAAAGACAGTTGGTGTCTCCAAGAAGCGTTGA 486 0.465 MELYDSYIGTSLVANEDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFANICCKKADIDMNKRAGELTPTELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00357 161 FunFam 40S ribosomal protein S18 10 89 - -
Pte16g00357 161 Pfam Ribosomal protein S13/S18 23 151 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte16g00357 161 Gene3D 30s ribosomal protein s13, domain 2 101 151 IPR027437 -
Pte16g00357 161 Gene3D - 10 89 - -
Pte16g00357 161 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 11 161 - -
Pte16g00357 161 SUPERFAMILY S13-like H2TH domain 22 161 IPR010979 GO:0003676
Pte16g00357 161 Hamap 30S ribosomal protein S13 [rpsM]. 21 161 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte16g00357 161 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 10 161 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte16g00357 161 ProSiteProfiles Ribosomal protein S13 family profile. 24 154 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte16g00357 161 ProSitePatterns Ribosomal protein S13 signature. 130 143 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte16g00357 161 FunFam 40S ribosomal protein S18 101 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00357 Pte-Chr16 4751393 4752960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00357 11 162 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 92.105 7.84e-105 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00357 K02964 - atri:130814468 291.582