Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00328 ATGGCTTCCGATCTCGAAATCAAGGCAAAAGAGGCATTCATAGACGACCATTTCGAACTTGCCGTTGACCTCTACTCTACGGCCATCGCTCTCGACCCAAACAACGCTGAGCTTTATGCTGACCGTGCCCAGGCCAATATCAAACTACACAACTATACCGAGGCTGTTGCTGACGCAAACAAGGCAATTGAGTTGAATCCGGGACTTACAAAAGCTTATTTACGCAAAGGTACGGCATGTATCAAGCTTGAGGAATATCATACTGCTAAGAAAGCTTTGGAAGCTGGTAATACTTTGGCCCCTGGAGATTCAAGATTCGCAAATATGATTAGAGAATGTGATCAGCGCATTGCTGAGGAGAGTGCTGAAGATGTTAAGATCAATACAACAGAAGTATCTACAAGTATTATTCAGCCGACAGTAACCAATTCCTCTGTGCCTGCAGTGGTGCCAATGAAACCAAAATACAGGCACGAATTCTACCAGAAACCAGAGGAGGTTGTAGTAACTATATTTGCTAAAGGCATTCCTCAAGACAATGTTTTTGTTGATTTTGGTGAACAAATTCTAAGTGTTACGATTGAAGTCCCTGGTGAGGAAGAATACCACTTTCAACCCCGTCTTTTCGGAAAGATAGTTCCAGCTAGGTGCAGATATGATGTTTTGTCGACTAAAGTTGAAGTTCGCCTTGCAAAAGCTGAAGCCATCAATTGGACATCTCTTGAATACAGCAGGGAAATTGTAGTTCCACAAAAAGTCAATGATCCAGCTGCTGTGCTTGGAAGACCTACATACCCATCATCAAAACCAAAGAGAGTTGATTGGGATAAGCTTGAAGCTGAAGTGAAGAAAGAGGAGAAAGATGAAAAGCTTGATGGTGATGCAGCTTTGAACAAATTTTTCCAAGACATTTTTAAGAATGCAGATGAAGACACCAGAAGAGCCATGCAAAAATCTTTTGTTGAGTCCAATGGAACAGTGCTGTCTACAAATTGGAAGGAGGTGGGTTCTAAGAAGGTGGAGGGAAGTCCACCTGAAGGCATGGAGGTGAAGAGATGGGAATACTAA 1068 0.426 MASDLEIKAKEAFIDDHFELAVDLYSTAIALDPNNAELYADRAQANIKLHNYTEAVADANKAIELNPGLTKAYLRKGTACIKLEEYHTAKKALEAGNTLAPGDSRFANMIRECDQRIAEESAEDVKINTTEVSTSIIQPTVTNSSVPAVVPMKPKYRHEFYQKPEEVVVTIFAKGIPQDNVFVDFGEQILSVTIEVPGEEEYHFQPRLFGKIVPARCRYDVLSTKVEVRLAKAEAINWTSLEYSREIVVPQKVNDPAAVLGRPTYPSSKPKRVDWDKLEAEVKKEEKDEKLDGDAALNKFFQDIFKNADEDTRRAMQKSFVESNGTVLSTNWKEVGSKKVEGSPPEGMEVKRWEY* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00328 355 CDD p23_CS_SGT1_like 159 242 - -
Pte16g00328 355 FunFam Protein SGT1 homolog A 151 254 - -
Pte16g00328 355 Pfam Tetratricopeptide repeat 36 68 IPR013105 -
Pte16g00328 355 ProSiteProfiles CS domain profile. 153 242 IPR007052 -
Pte16g00328 355 SUPERFAMILY TPR-like 7 113 IPR011990 GO:0005515
Pte16g00328 355 ProSiteProfiles SGS domain profile. 264 355 IPR007699 -
Pte16g00328 355 SUPERFAMILY HSP20-like chaperones 150 250 IPR008978 -
Pte16g00328 355 MobiDBLite consensus disorder prediction 336 355 - -
Pte16g00328 355 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Pte16g00328 355 FunFam Protein SGT1 homolog 1 130 - -
Pte16g00328 355 Pfam SGS domain 274 353 IPR007699 -
Pte16g00328 355 Pfam CS domain 157 232 IPR007052 -
Pte16g00328 355 Pfam Tetratricopeptide repeat 71 101 IPR019734 GO:0005515
Pte16g00328 355 Gene3D Tetratricopeptide repeat domain 1 142 IPR011990 GO:0005515
Pte16g00328 355 Gene3D - 154 244 IPR008978 -
Pte16g00328 355 PANTHER PROTEIN SGT1 HOMOLOG 1 353 IPR044563 GO:0051087
Pte16g00328 355 Coils Coil 42 62 - -
Pte16g00328 355 SMART tpr_5 2 35 IPR019734 GO:0005515
Pte16g00328 355 SMART tpr_5 70 103 IPR019734 GO:0005515
Pte16g00328 355 SMART tpr_5 36 69 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00328 Pte-Chr16 4333499 4337814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00328 1 112 U-box Gene Family AT3G07370 29.464 5.92e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00328 K12795 - cave:132181375 519.235