Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00286 ATGCCAGTTGCAAAACTTAAGGCCTCTAACGCTACAGATGTTATGAAAACGGAAGAGGGGAATGATTCCCTTGATACAGTAATCAGACAAGCAATTGGTAGAGAACCCTTTCTTTCTTTCTCTAGAGCCAGTGACAGTCCTGTACAGTGGATTCAGTTGCTCCAAGCTTTGGATAAGCAAGAAGTTCCTGGTTGGCCCTTTGTCTCTCCTTTGAAGGTTCAGCTTCAGAAGTGTGAAAAGTGCTCTCGAGAATTTTGCTCGACAATTAATTACAGAAGGCATTTACGTGTGCACCATCGCCTAAAGAAACTTGACAAGGATTTTATAAAAGACAGGGAGCTGTTAGGAGCTTATTGGGATAAGCTCTCAGTAGAAGAGGCAAAGGAAGCTGTCTCTTTCAATAATGTAATGCTGGAGGAAGTTCCTGGTTCCTCTGTTATAAAAGCTTTGACAACCGTTATACGAAAACCAGGATTTTCTTCACTTCCACAGAATTATTTAGAGGCTGGTTCTTCCCTTCTGGATATCATACAAGCTAGACCCTCAAGGTTTCCCCTATCTTCCCAAGAGTTATTGAGTATACTTGATGATGCAAGTGAAAAAACATTTCTATGTGGGGCACCTGGGTCAGTGCAAAATTATATTTTCGATGGAGAGGCTGGGACGCTTGGTCTTGAAACAAAAAACCTGATTGCATATTGTAGTTTTTTGGTGGAGCAGAAATTGGTCAAAGAATGGTTAGCTGACAAAGATGCCGAAGCATTGAGATGCCAGAAATTGCTGGTGGAGGAAGAAGAGGCTGCTCAAAAACGACAAGCTGAGCTTTTGGAGAAGAGGAGGAGGAAAAAGCTTCGGCAGAAAGAGCAGAGGGCAAAAGATAAAAGGTTTGAGGGCTTTGCATATGCTAAAGATGATGGTATCAGTAGTTCAGAAGAGGCTCTTTCACCAGCAGAAGCATTTAGCCCTTCAACTATGCATCACAATGAAGCAAGTCCTGCACAAAAATCGCTGGATTGCATGCCTTTGTCTCCCAACACCATTCGTAGCCCAAATGCATCAGAGAGATGTGGTCATGGATACACGATTTCAAGCCAACAGTTGCTTCCAAAATCACAACGCGCCATGACTAGTGGCTACCATGCTCACACTTCTCAAATATCCAAGCTTGGAGTCCCACGTAAGTCTTGGCAACGAGACCAAAGACTAAGCGCTCCTACAACAAATGGCTATAGAATATGGAGCCGGAAGTCAAAAACCGAAATGGATGAGACCCTTTCACGTGTGAGGACACAAACAAATCAAAATCACGAGCCAGATCAAACTAAAAATGGTGAAGTCCTAATAGGCTCTATATCAGTGACCTTTGGCAATTATTGCCAACCAGAGTGTAATCCAGCAGAACCTCAAGATCTATCTATGACAGAGAATAAGCCCAGGCAGAACAATTTCCATGTAAAACCTGTCAAAACTGATACTCTTCAGTGTGGCTCAAATAGATCGACTACCAAGCATTGGAGGCCAGTCAGTGGTCAGGGTTTGAAAGTGCCAATAAGTGAAAATGATGTTAGAGAAGCTGACGTAGATGCAATTGGTGGAAAGGAAGGTGATCAGATCATGCTTGTAGATTTTAGATCAGGTATTGCAGATGACGATACAAACACTCTTGTCAATGAGCGTCTGGACACCAGAAGTGCGGGATTTTCCAGTCTTGCTGCAAGAGCCTTTCTTGAGCAAAGATGGAAAGAGACTATCTTGTCCGAACATGTGAAGCTAGTTCTTTCGCCACCCTCAGATTCTCTGTCAGGGCTTGAGATGGAGAATCATGAACAAGCATGTCCATTTTACAACATTCATGATAGTGTAGGGAATGGTTCGATAAACATGGAGGCTCTTGAGGGTGCGTGCTCTACAGCTGCGACATCTAAGTTCTTCGTAAAACCTGAAAAGGGTCTTAAGGTGAAGTACATTCCTAAACTAAAGACAGGTACCTAG 1992 0.4312 MPVAKLKASNATDVMKTEEGNDSLDTVIRQAIGREPFLSFSRASDSPVQWIQLLQALDKQEVPGWPFVSPLKVQLQKCEKCSREFCSTINYRRHLRVHHRLKKLDKDFIKDRELLGAYWDKLSVEEAKEAVSFNNVMLEEVPGSSVIKALTTVIRKPGFSSLPQNYLEAGSSLLDIIQARPSRFPLSSQELLSILDDASEKTFLCGAPGSVQNYIFDGEAGTLGLETKNLIAYCSFLVEQKLVKEWLADKDAEALRCQKLLVEEEEAAQKRQAELLEKRRRKKLRQKEQRAKDKRFEGFAYAKDDGISSSEEALSPAEAFSPSTMHHNEASPAQKSLDCMPLSPNTIRSPNASERCGHGYTISSQQLLPKSQRAMTSGYHAHTSQISKLGVPRKSWQRDQRLSAPTTNGYRIWSRKSKTEMDETLSRVRTQTNQNHEPDQTKNGEVLIGSISVTFGNYCQPECNPAEPQDLSMTENKPRQNNFHVKPVKTDTLQCGSNRSTTKHWRPVSGQGLKVPISENDVREADVDAIGGKEGDQIMLVDFRSGIADDDTNTLVNERLDTRSAGFSSLAARAFLEQRWKETILSEHVKLVLSPPSDSLSGLEMENHEQACPFYNIHDSVGNGSINMEALEGACSTAATSKFFVKPEKGLKVKYIPKLKTGT* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00286 663 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Pte16g00286 663 MobiDBLite consensus disorder prediction 307 337 - -
Pte16g00286 663 MobiDBLite consensus disorder prediction 314 331 - -
Pte16g00286 663 MobiDBLite consensus disorder prediction 492 507 - -
Pte16g00286 663 MobiDBLite consensus disorder prediction 492 513 - -
Pte16g00286 663 Coils Coil 261 281 - -
Pte16g00286 663 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Pte16g00286 663 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00286 Pte-Chr16 3782845 3788129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00286 18 658 C2H2 Transcription Factor Family AT4G25610 43.223 4.82e-146 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte16g00286 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00286 - - cpap:110810369 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00286 16 3782845 3788129 Pte16g00286 16 3782845 3788129 RCT