Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00264 ATGGGGTGCAAATTATCAGATAAGGCAAAGCCAAAGCATAAGAAGGGTTTGTGGTCACCGGAAGAAGATAATAAGCTCAGAAACTATATCCTCAAGAATGGTCACGACTGCTGGAGTGTAGTTCCCATCAAATCTGGTCTGCAGAGAGATGGAAAGAGCTGCCGTCTCCGATGGATGAATTACCTCAGGCCTGGATTGAAACGAGGGATGTTTAGCAAACAAGAAGAGGAGACAATCTTGACCCTTCACCACATGTTAGGCAACAAATGGTCTCAAATAGCTCAACATTTGCCAGGAAGAACTGATAATGAGATAAAAAACTACTGGCATTCATATTTGAAGAAGAAACTAGCCAAATCTGAAGAAATGGAGGGTCCTGCACAATTACAACACACAAGCTCAAGCTCAGATTCAATGGAATCACCTTCTGCCTCAAATCCGGTCAGAGTTGCAGGCTACAATCTAATTGAAACCGTGAAACAATTTCCTGCATATGCTGAATATTCAATCCCCCAGAACTCTGACTTCAATAAAGATGCATGTCAAAGCTCCTTGCCAAAGCTGTTATTTGCTGAGTGGCTTTCAACAGACCATGTCTACAGTGGGACCTCCGCCGTGAGTTCAGTGGACTGCAGCGCTCTCGGAAACGATTCAAATCATGATTCAAGCTGTGAGGAAGAATTAGTTCATGGGTATATACCCAATGAAGGAACATATGGTGGAAATCTGCATAATGATCTAAGTGATGGCTCAGCACCTGAAATATTATTCAATTCACATTTTCAATTGACAGATCATACGACAGGACATGGATATGATCATTACCTGATCTCTGAAAGTGATTTAAGCAATCATTTTTATGTGCATAATGATGTAAGATACATATGA 888 0.4122 MGCKLSDKAKPKHKKGLWSPEEDNKLRNYILKNGHDCWSVVPIKSGLQRDGKSCRLRWMNYLRPGLKRGMFSKQEEETILTLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKKLAKSEEMEGPAQLQHTSSSSDSMESPSASNPVRVAGYNLIETVKQFPAYAEYSIPQNSDFNKDACQSSLPKLLFAEWLSTDHVYSGTSAVSSVDCSALGNDSNHDSSCEEELVHGYIPNEGTYGGNLHNDLSDGSAPEILFNSHFQLTDHTTGHGYDHYLISESDLSNHFYVHNDVRYI* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00264 295 Gene3D - 70 142 - -
Pte16g00264 295 CDD SANT 71 113 IPR001005 -
Pte16g00264 295 CDD SANT 18 62 IPR001005 -
Pte16g00264 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pte16g00264 295 FunFam MYB transcription factor 12 68 - -
Pte16g00264 295 Gene3D - 7 67 - -
Pte16g00264 295 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pte16g00264 295 SMART sant 14 64 IPR001005 -
Pte16g00264 295 SMART sant 67 115 IPR001005 -
Pte16g00264 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Pte16g00264 295 MobiDBLite consensus disorder prediction 126 146 - -
Pte16g00264 295 FunFam MYB transcription factor 70 141 - -
Pte16g00264 295 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pte16g00264 295 PANTHER MYB DOMAIN PROTEIN 55 1 179 - -
Pte16g00264 295 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Pte16g00264 295 MobiDBLite consensus disorder prediction 121 146 - -
Pte16g00264 295 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pte16g00264 295 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00264 Pte-Chr16 3582424 3583863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00264 3 296 MYB Transcription Factor Family AT5G52260 42.053 1.25e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte16g00264 Myb_DNA-binding 2.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00264 K09422 - qsa:O6P43_008229 357.451