Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00262 ATGTCCTTCGAGAGTTTCCCTCTTCGACAAATACCGGATAACGTCTCTCTCTCAGACACTCGTGCATACACAGAAGCTCATGGGTGTAAAGAATTTGTGGGATATCTTGGACTCCTGCAAGAAGAAATTACCCCTTCACAATCTCCAGAACAAAAGGGTATGCATAGATCTCTCATGCTGGATGGTACAACTTCAAAATGTGAGCAAATCACACTCATGTATGAAGGAGAAAGTACGATTCTTTGGTTTTCCATAATTTCATATTTGCTTATGATCATGTCTTTTTTGGGTACCAAAATGTTTGCAAACACGGATCAGAAAGTTGACATTGAACTGTCACGGGATCGAAATGGATCAATTCCTGCCATTAAACTACAAACTTATAGGCGTCGTTTAAACTCCGGAGCTGACACGATTCCTCTAAATGATAGCACAAAGACAGTATCTTCCCTGCGAAGGAACATGGGATCTGAGTTTTCATGCATGATAAAAGAGGCTAAGCTTCTGGGCTCAGCACTCGGCATCCCATGTTTGAATGGGATTGAGGAAGCTGAAGCTCAGTGTGCTTTGCTAAACTACGAATCGTTATGTGATGGATGCTTTACTTCAGATTCAGATGTATTCCTCTTTGGTGCCAGGACAGTGTATAGAGATATCTGCCTTGGAGATGGTGGATATATCATTTGTTATGAGATGGAAGATATTGAAAGGAATCTTGGGTTTGGAAGGAACTCCCTGATTACTCTTGGCTTGCTTCTTGGCAGTGATTATACTGAAGGAGTTTATGGTCTAGGACGTGAATCAGCTTGTCAGATAGTCAAATCAATTGGAGACAATGCTGTCCTCAAAAAAATGTATTCAGACGAGCTTTTCTTGACAAATAAGAAAAAAGCTGCAAAAAATAAAATAAGGAATTTGAAGTGCAGTAACAAGGAAAATATATGTGAGCCTGAGATGAATTCAGTTAATGGATGTGAGAACAACTTGAAAAGCAATCAGCGGTTCCTGCATGTGATTGATGCATATTTGAAGCCAAGGTGCCACCAGGCAGATTCTGATGCTGTTCAGAGGGTTCTTGTGCAGCATTCTTTCCAACGTATAAAGTTTCAACAAATATGTGCTCAATTATTTGAGTGGCCTCCGGAGAAAACGGATGAATACATCCTTCCTAAAATTGCTGAAAGGAACCTGCGCCAATTTGCTAATTTGCGCTTGACTTCATCCACACTTGGGTTAAACCTTTCTCTACCTCAGATCCCTGTAGCCTGCCCTTTATTTGAAATTATCAAACCCCGAAAAGTTCAAGGAAAAGAGTGCTATGAGGTTGCATGGAAAGATATGGATGGTCTCAAATCCTCAATAGTCCCTTCAGATCTGGTAGAAAGTGCTTGTCCTGAGAAAATTGTGGAGTTCAAGGAGAGAAAAGCTCATGGTAAAAAGCCAAATCGCCGAAATAGAAGCCACAAGCAAATTGCTAACAAATTTTCTATGGAAGAACTTGACTTAAAACTGAAGACTCTTTTGCTGGATGTTGAACAAGGAGACAACAGCTTTGGTAATGCAACATGCCCTTTGAAGTTCATGGCAGGAAAAGAAAATGTCAGCACCAAAGCTAGTCTGCAGAATCAAAAGTTGTCACCCTGCACGGAAACAAAAGTGCAGGATGACAGTAGCAAATTTGTCATATCCGAAAACGAGCAAGGCTCTAGTTACAGTAAGACTGAAGTCATAGATCTCCTGAGCCCATCCCCTCAGAAAAATACATGCAGCTTTAGCAAATTTGAACGATCAGACATTGAAGTCGTTAAAACTGTCGAAGTGATTCATCTGAGTGACTCAGAAGCTGAATCATCACCTGAACATCAGCGGAGACTAAGAGAATTAAGATCGTTCATTACAAGTATGAAGAATGATATCTAG 1920 0.4057 MSFESFPLRQIPDNVSLSDTRAYTEAHGCKEFVGYLGLLQEEITPSQSPEQKGMHRSLMLDGTTSKCEQITLMYEGESTILWFSIISYLLMIMSFLGTKMFANTDQKVDIELSRDRNGSIPAIKLQTYRRRLNSGADTIPLNDSTKTVSSLRRNMGSEFSCMIKEAKLLGSALGIPCLNGIEEAEAQCALLNYESLCDGCFTSDSDVFLFGARTVYRDICLGDGGYIICYEMEDIERNLGFGRNSLITLGLLLGSDYTEGVYGLGRESACQIVKSIGDNAVLKKMYSDELFLTNKKKAAKNKIRNLKCSNKENICEPEMNSVNGCENNLKSNQRFLHVIDAYLKPRCHQADSDAVQRVLVQHSFQRIKFQQICAQLFEWPPEKTDEYILPKIAERNLRQFANLRLTSSTLGLNLSLPQIPVACPLFEIIKPRKVQGKECYEVAWKDMDGLKSSIVPSDLVESACPEKIVEFKERKAHGKKPNRRNRSHKQIANKFSMEELDLKLKTLLLDVEQGDNSFGNATCPLKFMAGKENVSTKASLQNQKLSPCTETKVQDDSSKFVISENEQGSSYSKTEVIDLLSPSPQKNTCSFSKFERSDIEVVKTVEVIHLSDSEAESSPEHQRRLRELRSFITSMKNDI* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00262 639 FunFam Flap endonuclease GEN-like 1 241 302 - -
Pte16g00262 639 SUPERFAMILY Chromo domain-like 427 482 IPR016197 -
Pte16g00262 639 SMART xpgineu 171 241 IPR006086 GO:0004518
Pte16g00262 639 CDD H3TH_XPG-like 244 289 - -
Pte16g00262 639 Gene3D - 242 307 - -
Pte16g00262 639 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 241 403 IPR036279 -
Pte16g00262 639 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 170 187 IPR006084 -
Pte16g00262 639 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 191 211 IPR006084 -
Pte16g00262 639 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 246 261 IPR006084 -
Pte16g00262 639 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 117 518 IPR006084 -
Pte16g00262 639 Gene3D - 112 240 - -
Pte16g00262 639 SUPERFAMILY PIN domain-like 118 256 IPR029060 -
Pte16g00262 639 Pfam XPG I-region 174 256 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00262 Pte-Chr16 3571814 3578195 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00262 52 277 Core DNA Replication Machinery Family AT5G26680 23.622 4.08e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00262 K15338 - qsa:O6P43_008236 624.394