Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00249 ATGCTGAGGAAAATGGAGACACTTGGAGATATGGGTCTTTTTGCAGAAAACTTTGATTCTAACTTGCTTGCAAGACTAAGAGAAGGTGAGAATGAGAGCCGATCAGGGAGTGAAAACTTTGAAGGTGCTTCAGGTGCTTCGGGTGCGTCGGGTGCTTCGGGTGATGATCAGCAGGAAGGTGGTGACGATAGTGGGCAACCAATGAATAAAAAATATCACAGACACTCTCACAGCCAAACCAGTGAACTTGAATCACTCTTCAAGGAGTGTCCACATCCTGATGAAAAGCAAAGGTTAGATCTTGGCCGGAAGCTTGGCTTGGAAAGTAGGCAAGTCAAGTTCTGGTTTCAGAATCGGCGAACCCAGATGAAGGCTCAATTGGAACGCCATGAGAATATAATTCTCAGACAAGAAAATGACAAGTTAAGAGTAGAGAATATTCTGATGAAGGAAGCTATGAACAACCCCACATGCAACACTTGCGGGGGCCCTGCTTTGGTGGGTTCAATTTCACGAGAGGACCACCAGCTCAAAATCGATAATGCTCGACTGAGGGAGGAGCTGAATCGTCTAAGTACTTTGGCAAGCAAGTTCCTGGGAAGGAGCCTGTTGACTTCTAACCATCCTCTTGAAATTCCAAACACTTCTAATGATTTCCAACCAGGTGTCGCTAGTTTTAATGGTGTTGGTACTTCTGCCTTGCCAACGGACCTTGGGATCGATAACGGTTATGCGAGCGCTTCATCTGCGTTGTCATCAATGAATTCACCATTGGAAATGATGGCAAATGATGGGAAATCTGTGCTACTAAATATTGCATTTAATGCCATGGATGAGCTTATGAGACTTGCTCAAGCTGCACCTCCCCTTTGGGTCAAAACTCTGGATGGTGAGAGAGAAGTGCTAAATCGAGAGGAATACTTGAGGAGCTTCAATTCTTGTTTTGGTCTCACACCTGCTGGTTATGTCACGGAGGCTACCAGAGACAGCGGTATGGTTATCGTCAGTAGTTCGGCTCTGGTGGAGATTTTGACAGACGCAAACCAATGGAAAGAAATGTTCAAAGGCATCATTGCTGTAGCTGCCATTGTTGACAAAGTTACAGATGACATCAACGGATCCAAGGATGGAGCTATACTGTTGATGCATGCTGAGATGCAAGTGCCGTCACCATTGGTTCCTATTCGTCGATCAAGGTTTCTCCGATTCAGCAAGAGGCATGCAGAGGGTCTCTGGGCTGTTGTAGATATTTCCCTGGACAATGAAAACACATTCCCAAATTGTAGAAGGCTTCCTTCAGGCATTCTTGTGCAGGACATGCCCAATGGCTACTCCAATGTAATTTGGATAGAGCATTCCGAGTACGATGAAAGTGCAATCCATCAACTCTATAAACCTTTGGTGAGTTCAGGAATGGCCTTTGGTGCTAATAGGTTCATTGCCACTCTCCAAAGACAATGTGAAAGCTTTGCAATGCTCATGGTCCCTCCCACCCCAAGTGATGATGACGAAGAACCCATCGACCTAGCTGGTAGGAAAACCGTATGGAAGCTTGCACAACGAATGACCGATACCTTCTTTTCGGGCATTTGTGCAACAGGCACACATTATTGGGAGATACTTCCAATGGGAATTTTGGATGACATGAGGGTGATGATTCGCCAGAATCTCGCTGACCCCGGTGAGCCGATCGGTGTTCTTCTGAGTGCTGCAACTTCAGTATGGATGCCAGTTTCCCGCCATACACTGTTCAGTTTTCTGAGCAATGAACTGCTCAGGGGCGAGTGGGACGTTCTGGCAAAGGATGCACCCATGGAAGAAGTGGTCCACATTGCTAAGGGCCATGCTGATGGAAACGCCATTTCCATTCTTCGTTGTACCGTAAGTGCTGAGGATGATGAAAGCTCCACGCTGATACTGCAAGAGTCGTGGACTGATGCCTCGTCTTCGCTGCTAGTGTATGCTCCTGTTGATATGCACTCCCTGAACGCAGTGCTGAACGGTGAAGAGTCTTCCTGTTTGGCTCTCCTGCCTTCAGGATTTGCAATTTATCCTGATGCTCAGTCCATCTATTGCAATGGAGGATATGATGCAGGTGGATGCCTGCTTACAGTTGGATTCCAGATAGTGATCAATGAAAACCCTTCATCCAAGGTCTCAGACGAAACTGCTCAGACAGTCAACAGTATCATGACCAGCTTGATGCAGAGGATCAAAACTGCCCTCCGAGTGTGA 2235 0.4671 MLRKMETLGDMGLFAENFDSNLLARLREGENESRSGSENFEGASGASGASGASGDDQQEGGDDSGQPMNKKYHRHSHSQTSELESLFKECPHPDEKQRLDLGRKLGLESRQVKFWFQNRRTQMKAQLERHENIILRQENDKLRVENILMKEAMNNPTCNTCGGPALVGSISREDHQLKIDNARLREELNRLSTLASKFLGRSLLTSNHPLEIPNTSNDFQPGVASFNGVGTSALPTDLGIDNGYASASSALSSMNSPLEMMANDGKSVLLNIAFNAMDELMRLAQAAPPLWVKTLDGEREVLNREEYLRSFNSCFGLTPAGYVTEATRDSGMVIVSSSALVEILTDANQWKEMFKGIIAVAAIVDKVTDDINGSKDGAILLMHAEMQVPSPLVPIRRSRFLRFSKRHAEGLWAVVDISLDNENTFPNCRRLPSGILVQDMPNGYSNVIWIEHSEYDESAIHQLYKPLVSSGMAFGANRFIATLQRQCESFAMLMVPPTPSDDDEEPIDLAGRKTVWKLAQRMTDTFFSGICATGTHYWEILPMGILDDMRVMIRQNLADPGEPIGVLLSAATSVWMPVSRHTLFSFLSNELLRGEWDVLAKDAPMEEVVHIAKGHADGNAISILRCTVSAEDDESSTLILQESWTDASSSLLVYAPVDMHSLNAVLNGEESSCLALLPSGFAIYPDAQSIYCNGGYDAGGCLLTVGFQIVINENPSSKVSDETAQTVNSIMTSLMQRIKTALRV* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00249 744 SUPERFAMILY Bet v1-like 265 490 - -
Pte16g00249 744 MobiDBLite consensus disorder prediction 26 82 - -
Pte16g00249 744 SUPERFAMILY Bet v1-like 518 739 - -
Pte16g00249 744 MobiDBLite consensus disorder prediction 36 64 - -
Pte16g00249 744 Pfam Homeodomain 70 124 IPR001356 GO:0003677
Pte16g00249 744 SMART START_1 271 489 IPR002913 GO:0008289
Pte16g00249 744 Coils Coil 120 140 - -
Pte16g00249 744 MobiDBLite consensus disorder prediction 66 82 - -
Pte16g00249 744 Pfam START domain 272 489 IPR002913 GO:0008289
Pte16g00249 744 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Pte16g00249 744 FunFam Homeobox-leucine zipper protein HDG1 54 142 - -
Pte16g00249 744 Gene3D - 55 141 - -
Pte16g00249 744 CDD homeodomain 70 126 IPR001356 GO:0003677
Pte16g00249 744 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 68 742 IPR042160 -
Pte16g00249 744 SMART HOX_1 68 130 IPR001356 GO:0003677
Pte16g00249 744 CDD START_ArGLABRA2_like 266 488 - -
Pte16g00249 744 SUPERFAMILY Homeodomain-like 61 129 IPR009057 -
Pte16g00249 744 ProSiteProfiles START domain profile. 262 492 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00249 Pte-Chr16 3067643 3071236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00249 5 742 Homeobox Transcription Factor Family AT3G61150 47.718 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte16g00249 START 2.4e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00249 K09338 - gmx:100785102 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00249 16 3067643 3071236 Pte9g00310 9 3424730 3429571 RCT
Pte16g00249 16 3067643 3071236 Pte16g00249 16 3067643 3071236 RCT