Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00227 ATGAATAACGCAGAAGCAAATAATGTAATGATGGAAATAGAGGCAAGCAAACCAACAGGAAATGCAATGGCGGTTGCAGGATTGAGTCCACTAAGTGAGACCCTTTGGAGGGAGAAGACGAACATGGAATTCATTGGTGATGTATCTGCTAGGCTGACATGGAAGGATCTGACTGTTATGGTCACTCTTGGTAAAGGAGAGACTCAGAATGTTCTGGAAGGTCTCACTGGTTATGCTGAGCCTGGAACTTTCACAGCTCTCATGGGTCCTTCCGGCTCAGGCAAATCTACTTTGCTTGATGCACTTTCTAGTCGTTTAGCTGCTAATGCATTCCTTTCCGGCACCATCCTCCTCAATGGACGTAAAACAAAGCTCTCCTTTGGGACTGCAGCTTATGTGACTCAAGATGACAACTTGATTGGTACTTTGACAGTTAGGGAAACAATATCATATTCTGCTCGTCTCCGTCTTCCTGATAAGATGTCAAGGTCAGAGAAGCGTGCATTGGTTGAGAGTACCATAGTGGAAATGGGTCTTCAGGATTGTGCTGACACAGTTATCGGAAATTGGCATTTGCGTGGGATCAGTGGAGGGGAAAAGAGAAGGGTTAGCATTGCCTTGGAAATTTTGATGAGGCCTAGATTGCTCTTTCTTGATGAGCCAACTAGTGGACTAGACAGTGCTTCAGCTTTCTTTGTAACCCAGACTCTGCGAGCTCTTGCACAAGATGGACGGACTGTGATAGCATCAATTCACCAACCTAGCAGTGAAGTGTTTGAATTATTTGACCAACTGTTTTTGCTTTCTGGTGGCAAAACTGTTTATTTTGGCCAGGCTTCAGAAGCTTATGAATTCTTTGCACAAGCAGGATTTCCCTGCCCTGCACTGAGAAATCCATCTGATCATTTTCTGAGATGCATCAATTCTGACTTTGATAAAGTTAAAGCCACTCTAAAAGGGTCCATGAAGTTAAGGTTTGAGGCAAGTGATGATCCTTTGGAGAAGATAACTACAGCTGAAGCAATCCGAACTCTCATCGATTTCTACCGCACATCTCCATACTCCTATATAGCAGCACAAAAAGTAGATGAGATATCAAAAGTTAAGGGAACTGTGTTAGATTCTGGAGGGAGTCAGGCTAGTTTCTTGATGCAGGCTTTTACATTGACAAAGCGCTCATCCATCAACATGTCAAGAGATTTTGGTTACTACTGGCTTAGGCTAGTTATTTACATTGTAGTAACCATCTGCATTGGAACCATCTACTTGAATGTGGGGACAAGTTACAATTCAATTCTGGCAAGAGGATCATGTGCATCCTTCGTGTTCGGCTTTGTTACGTTCATGTCAATTGGGGGGTTTCCTTCATTTGTCGAAGACATGAAGGTTTTCCAAAGAGAAAGGCTAAATGGTCACTATGGAGTCTCTGCCTTTGTCATTAGCAACACAATATCTGCGATGCCATTTCTGATACTGATAACTTTCCTCTCCGGAACAGTTTGTTATTTCATGGTTCGCCTTCATCCTGGTTTTGGGCACTATATATTCTTTGTCTTGTGCCTCTATGCTAGTGTCACAGTGGTTGAAAGCTTAATGATGGCTATTGCTAGTATTGTACCCAACTTCCTCATGGGTATCATCATTGGTGCTGGAATTCAGGGAATATTTATGTTGGTGTCTGGATACTTTAGGCTCCCAAATGATATCCCAAAGCCGTTTTGGCGCTACCCCATGTCATATATCAGTTTTCACTTCTGGGCTTTGCAGGGACAATACCAGAATGATCTTCAAGGTCTTCTATTTGATAGCCAGACCCCAGGCCCTTTCAAGATTCCTGGAGATTACATCCTGCAAAATATATTCCAAATCAATGTGCACAGGTCAAAATGGATTGATCTCAGTGTACTTTTCAGCATGATAGTTATCTACCGTATCTTGTTCTTCATCACCATCAAGACCAATGAGGATGTTACACCTTGGATTAGAGGGTATATTGCAAGAAGAAGAATGCAACAGAAGAATGGCACACAAAATAAAACCATTGCTCCAGATGGTCTCACTCAGTCACCTTCACTGAGAACCTATGTTGCCAATGGTTCCCCCAGCAATGGTAAGAGAAAGATTGAGAAGTATAACTCTCCTGACAAATATACCTGA 2157 0.4256 MNNAEANNVMMEIEASKPTGNAMAVAGLSPLSETLWREKTNMEFIGDVSARLTWKDLTVMVTLGKGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMSRSEKRALVESTIVEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALAQDGRTVIASIHQPSSEVFELFDQLFLLSGGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEASDDPLEKITTAEAIRTLIDFYRTSPYSYIAAQKVDEISKVKGTVLDSGGSQASFLMQAFTLTKRSSINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTSYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVSAFVISNTISAMPFLILITFLSGTVCYFMVRLHPGFGHYIFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPNDIPKPFWRYPMSYISFHFWALQGQYQNDLQGLLFDSQTPGPFKIPGDYILQNIFQINVHRSKWIDLSVLFSMIVIYRILFFITIKTNEDVTPWIRGYIARRRMQQKNGTQNKTIAPDGLTQSPSLRTYVANGSPSNGKRKIEKYNSPDKYT* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00227 718 CDD ABCG_EPDR 49 277 - -
Pte16g00227 718 Gene3D - 46 290 IPR027417 -
Pte16g00227 718 MobiDBLite consensus disorder prediction 672 707 - -
Pte16g00227 718 Pfam ABC transporter 74 223 IPR003439 GO:0005524
Pte16g00227 718 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524|GO:0016887
Pte16g00227 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 289 IPR027417 -
Pte16g00227 718 SMART AAA_5 81 271 IPR003593 GO:0016887
Pte16g00227 718 Pfam ABC-2 type transporter 385 591 IPR013525 GO:0016020|GO:0140359
Pte16g00227 718 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 52 295 IPR003439 GO:0005524
Pte16g00227 718 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 39 673 - -
Pte16g00227 718 MobiDBLite consensus disorder prediction 672 718 - -
Pte16g00227 718 FunFam ABC transporter G family member 11 46 289 - -
Pte16g00227 718 Pfam ABC-2 type transporter 252 308 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00227 Pte-Chr16 2839101 2843071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00227 82 256 Calmodulin-binding Proteins AT2G36910 33.696 1.11e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00227 K05681 - jre:108998355 1265.75