Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00226 ATGACATGCAAAGCTCAACTCAACACTCTGACTATGTCAAGCACAATATGTGCTCATATTTGCATGCGATTTGACCTAGATGAAGCCCTTACAATGGCGGAACAGTATTGTAGTAGAAGAGCAGCAGCACGTGACCAATTTGTCAAAGACTTGCCAGCGCCAGTGGTGCATGAATGTGGAGGAAACCCCAATGACGACGGCATTTGTCCAGTCTGCATGAGCAAATACTTGCTTTGCAATAGTATGACTGACGATGATAATTGCTGTGTGCAAATTCCATGTGGTCATGTCTACCATGCCATCTGCATCTCTACCTGGCTCTCTCACAACACCTCTTGTCCTGTATGCCGCTGGGAAATCCCAGTAGAACATGCTTAG 378 0.4603 MTCKAQLNTLTMSSTICAHICMRFDLDEALTMAEQYCSRRAAARDQFVKDLPAPVVHECGGNPNDDGICPVCMSKYLLCNSMTDDDNCCVQIPCGHVYHAICISTWLSHNTSCPVCRWEIPVEHA* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00226 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 123 IPR013083 -
Pte16g00226 125 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 42 121 - -
Pte16g00226 125 ProSiteProfiles Zinc finger RING-type profile. 69 117 IPR001841 -
Pte16g00226 125 SMART ring_2 69 116 IPR001841 -
Pte16g00226 125 SUPERFAMILY RING/U-box 64 122 - -
Pte16g00226 125 Pfam RING-H2 zinc finger domain 68 117 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00226 Pte-Chr16 2837029 2837828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00226 26 123 C3H Transcription Factor Family AT5G01980 37.624 9.07e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00226 - K22378 qsa:O6P43_003971 98.2117