Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00224 ATGGGTCCTTCTCGTGTGACTGGAGGGTTAACTCAATCTTCTGCAAGTTCTGGAATATTATTTCAAGGAGACATGCAGTCCCAGGCTTTAGTTAACTCTCACTTAAGCTCATCTTTTGGGAACACATCTAACTCCATACCTGGAACTGGACGCTCGAATATGGGTCTGGTTTCTGGGGATATGAACAATGCAGTGTGGAATAGTGTTGCAAACTCAGCACCAAGTGTTGGAGCAAGTTCATTGGTTACTGATGCAAATTCAGCCCTTTCAAGTGGTGCCCATTTGCAAAGAAGTGCTAGCTTTAATACTGACTCTTACATGCGCTTGCCAGCTTCTCCCATGTCATTTTCATCAAATAATATCAGTATTTCAAGGTCCTCTGTCATAGATGGTTCTTCCATTGCACAACAGAACTCTCATCTGGATCCCAATGGGCAACATGTGACGCAGCAACAGCAAGGGGCTTCAAGTGCTACATCATTACCTTTATCACAAGCTAGCCAGTCTCAAATTCCTATGGTTGCACGGGGACCTGGATCTTTTGTTCAGGATCCTAGTAATTTATTACACCTGCAGAAGAAACCTAGACTGGATATGAAACAAGAGGAGATTCTAAACCAGCAGGTTATACAACAATTGCTTCAGAGGCAGGATTCTTTACAGTTTCAAGGTCCTCAGTTGCAAGCATTGCTTCAGCAGCAAAGATTGAGACAGCAGCAGCAGATTCTACAGTCTATGCCTCAGTTACAAAGAGCCCAATCGCAGCAGCAACATCTGCAATTGAGACAGCAACTTCAGCAGCAAGCCATGCAACCTTTATCTTCCATGAAGAGGCCTTCCGATGGTGGAGTTTGTACTCGCCGATTGATGCAATACCTATATCATCAGCATCAGAGACCCCAAGACAACAGCATTGGTTACTGGAGAAAATTTGTTTCCGAGTATTATTCTCCTCGTGCGAAGAAAAGATGGTGCTTGTCATTATATGAAAATGTTGGGCATCATGCACTTGGTGTTTTCCCGCAAGCTTCCATGGATGGATGGCAATGTGACATATGTGGCTCTAAATCTGGAAAGGGATTTGAGACAACTTTTGAAGTTCTTCCTCGACTTTACGAGATCAAATTTGGCAGTGGAATCATGGATGAACTTCTGTTTGTGGACTTGCCTCGGGAATGCAGATTTCCTTCTGGAATGATGATGCTGGAATATGGAAAGGCAGTTCAAGAAAGTGTGTATGAGCAACTGCGGGTTGTTCGGGAGGGTCAGCTTCGTATTATATTCACACAAGATTTAAAGATATTATGTTGGGAATTTTGTGCTAGGCGACATGAAGAATTGCTTCCTCGTAGGTTGGTTCAACCACAGGTGAATCAATTGGTCGAGGTAGCACAAAAATGCCAGAATACAATTTCCGAAAGTGGATCTGATGGCATATCAGAACAGGATCTGCAGTCGAATAGCAATATGGTACTGACAGCTGGACGTCAGCTTGCCAAGAGTTTGGAATTGCAGTCATTGAATGACTTGGGTTTCTCAAAACGATATGTGAGGTGCTTGCAGATCTCGGAGGTTGTCAATAACATGAAAGATCTGATAGATTTTTGCCGTGAGCACAAGGCTGGGCCTATTGATGGATTGAAAAATTATCCTCGGCATGCAGCAGTTCCCAAGCTTCAGATGCAAAAGATGCCGGAGATGGAGCAGTTAGCAAGCGTACAAGGCCTGCAAACTGATAGAAATGTAAATAATATGGTGGCATCGCATTCAAACCAAATAAGCAGTAATCATAACATTGTTAATCGGGGCACATTAAGTGGTTCAGCTCAGGCTGCTATGCAACTCACTAACTTCCAGAATCTGCTATTGAGACAAAACTCCATGAATTCAAACTCTAACTCACTCCAACTGGAAGCATCATCTTCCTTCACCAATTCAGACCAGATCCCACCTTCCGCCATCCAAAGTGCTACAGCTTTGAATTCCGGTTCCTTACACAACATTCCTGTTAGCGGTCTATCCAGTCCTCATTTTGGACCTCAGCATCACCAGCATCTTCAACAGTTTCAGCAACGTACATTGAGTGCTAATGGTTTACTGCAACAAAGTCACTTGCAGTCCTCTCAAGGAAATCAACCGTTACAGCAGCAGATGATCCAGCAACTCTTGCAGGAGATGTCAAATAACAATGGGGGTGGAATGCAGCCACAGTCACTTTCTGGGCCCAATGCTAGTGTAGGTATGGCAAAGACTACAATAGGTTTTGGAAACAATCCTCCATCCATGGCAGCTTCTACCACTAATATCTCTGAAAGTAATGGACCTGCCCCTAGCCGGAGTAACAGTTTTAAAGGTCCTTCGAACAGTGATTCCTCGGCAGCTGGTGCCAACAACGGGTTTAGCCAGAGAGCAGCTGAGGTTTCTCAAAATCTGCATTTGCAAGATGATGTGGTTCAAGACATTGCTCGTGAATTCACAGATAATGGGTTCTTTAGCAGTGATATAGACGACAACCTAGGCTATGGGTGGAAGGCATGA 2538 0.4405 MGPSRVTGGLTQSSASSGILFQGDMQSQALVNSHLSSSFGNTSNSIPGTGRSNMGLVSGDMNNAVWNSVANSAPSVGASSLVTDANSALSSGAHLQRSASFNTDSYMRLPASPMSFSSNNISISRSSVIDGSSIAQQNSHLDPNGQHVTQQQQGASSATSLPLSQASQSQIPMVARGPGSFVQDPSNLLHLQKKPRLDMKQEEILNQQVIQQLLQRQDSLQFQGPQLQALLQQQRLRQQQQILQSMPQLQRAQSQQQHLQLRQQLQQQAMQPLSSMKRPSDGGVCTRRLMQYLYHQHQRPQDNSIGYWRKFVSEYYSPRAKKRWCLSLYENVGHHALGVFPQASMDGWQCDICGSKSGKGFETTFEVLPRLYEIKFGSGIMDELLFVDLPRECRFPSGMMMLEYGKAVQESVYEQLRVVREGQLRIIFTQDLKILCWEFCARRHEELLPRRLVQPQVNQLVEVAQKCQNTISESGSDGISEQDLQSNSNMVLTAGRQLAKSLELQSLNDLGFSKRYVRCLQISEVVNNMKDLIDFCREHKAGPIDGLKNYPRHAAVPKLQMQKMPEMEQLASVQGLQTDRNVNNMVASHSNQISSNHNIVNRGTLSGSAQAAMQLTNFQNLLLRQNSMNSNSNSLQLEASSSFTNSDQIPPSAIQSATALNSGSLHNIPVSGLSSPHFGPQHHQHLQQFQQRTLSANGLLQQSHLQSSQGNQPLQQQMIQQLLQEMSNNNGGGMQPQSLSGPNASVGMAKTTIGFGNNPPSMAASTTNISESNGPAPSRSNSFKGPSNSDSSAAGANNGFSQRAAEVSQNLHLQDDVVQDIAREFTDNGFFSSDIDDNLGYGWKA* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00224 845 PANTHER LIM DOMAIN-BINDING PROTEIN 42 831 IPR029005 -
Pte16g00224 845 MobiDBLite consensus disorder prediction 135 168 - -
Pte16g00224 845 MobiDBLite consensus disorder prediction 754 797 - -
Pte16g00224 845 Pfam LIM-domain binding protein 288 548 IPR029005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00224 Pte-Chr16 2820837 2828614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00224 272 555 C2H2 Transcription Factor Family AT1G43850 57.042 4.48e-108 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00224 - - qsa:O6P43_008259 1109.75